RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 MELKQ14680 651 aa4□□□□□ -1.77
VPS29-202ENST00000447578 ALX1Q15699 326 aa4□□□□□ -1.77
VPS29-202ENST00000447578 TYSND1Q2T9J0 566 aa4□□□□□ -1.77
VPS29-202ENST00000447578 C2orf76Q3KRA6 126 aa4□□□□□ -1.77
VPS29-202ENST00000447578 PARP10Q53GL7 1025 aa4□□□□□ -1.77
VPS29-202ENST00000447578 Q5PR19 223 aa4□□□□□ -1.77
VPS29-202ENST00000447578 ZNF449Q6P9G9 518 aa4□□□□□ -1.77
VPS29-202ENST00000447578 FIGLAQ6QHK4 219 aa4□□□□□ -1.77
VPS29-202ENST00000447578 FAM198BQ6UWH4 519 aa4□□□□□ -1.77
VPS29-202ENST00000447578 SLC36A4Q6YBV0 504 aa4□□□□□ -1.77
VPS29-202ENST00000447578 GBP6Q6ZN66 633 aa4□□□□□ -1.77
VPS29-202ENST00000447578 FAM43BQ6ZT52 329 aaPredicted RBP4□□□□□ -1.77
VPS29-202ENST00000447578 PLA2G4DQ86XP0 818 aa4□□□□□ -1.77
VPS29-202ENST00000447578 MAML2Q8IZL2 1156 aaPredicted RBP4□□□□□ -1.77
VPS29-202ENST00000447578 BEST3Q8N1M1 668 aa4□□□□□ -1.77
VPS29-202ENST00000447578 EMC1Q8N766 993 aa4□□□□□ -1.77
VPS29-202ENST00000447578 PRR26Q8N8Z3 221 aa4□□□□□ -1.77
VPS29-202ENST00000447578 LINC00301Q8NCQ3 95 aa4□□□□□ -1.77
VPS29-202ENST00000447578 C7orf57Q8NEG2 295 aa4□□□□□ -1.77
VPS29-202ENST00000447578 ENGASEQ8NFI3 743 aa4□□□□□ -1.77
VPS29-202ENST00000447578 ADAMTS14Q8WXS8 1223 aa4□□□□□ -1.77
VPS29-202ENST00000447578 SPSB1Q96BD6 273 aa4□□□□□ -1.77
VPS29-202ENST00000447578 GRAMD2BQ96HH9 432 aa4□□□□□ -1.77
VPS29-202ENST00000447578 HES6Q96HZ4 224 aa4□□□□□ -1.77
VPS29-202ENST00000447578 URB1-AS1Q96HZ7 61 aa4□□□□□ -1.77
VPS29-202ENST00000447578 RMDN2Q96LZ7 410 aa4□□□□□ -1.77
VPS29-202ENST00000447578 PARK7Q99497 189 aaKnown RBP4□□□□□ -1.77
VPS29-202ENST00000447578 OLFM1Q99784 485 aa4□□□□□ -1.77
VPS29-202ENST00000447578 KXD1Q9BQD3 176 aa4□□□□□ -1.77
VPS29-202ENST00000447578 MLPHQ9BV36 600 aaPredicted RBP4□□□□□ -1.77
VPS29-202ENST00000447578 KATNB1Q9BVA0 655 aa4□□□□□ -1.77
VPS29-202ENST00000447578 KRTAP4-3Q9BYR4 195 aa4□□□□□ -1.77
VPS29-202ENST00000447578 NACAP1Q9BZK3 213 aa4□□□□□ -1.77
VPS29-202ENST00000447578 CNGB3Q9NQW8 809 aa4□□□□□ -1.77
VPS29-202ENST00000447578 ABCB8Q9NUT2 735 aa4□□□□□ -1.77
VPS29-202ENST00000447578 ANO10Q9NW15 660 aa4□□□□□ -1.77
VPS29-202ENST00000447578 SEPT10Q9P0V9 454 aa4□□□□□ -1.77
VPS29-202ENST00000447578 MOSPD1Q9UJG1 213 aa4□□□□□ -1.77
VPS29-202ENST00000447578 CDC14AQ9UNH5 594 aa4□□□□□ -1.77
VPS29-202ENST00000447578 SRPRBQ9Y5M8 271 aaKnown RBP4□□□□□ -1.77
VPS29-202ENST00000447578 SLIT2O94813 1529 aa4□□□□□ -1.77
VPS29-202ENST00000447578 LRP5O75197 1615 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 A0A1B0GVT2 93 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 ERICH2A1L162 156 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 GAGE12JA6NER3 117 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 TRIM77I1YAP6 450 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 TMEM189-UBE2V1I3L0A0 370 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 RTCAO00442 366 aaKnown RBP3.99□□□□□ -1.77
VPS29-202ENST00000447578 HS3ST1O14792 307 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 MDM4O15151 490 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 SSX4O60224 188 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 ZNF217O75362 1048 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 VNN2O95498 520 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 VIMP08670 466 aaKnown RBP3.99□□□□□ -1.77
VPS29-202ENST00000447578 FAM58BPP0C7Q3 252 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 HRH2P25021 359 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 PSMA3P25788 255 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 MARCKSP29966 332 aaPredicted RBP3.99□□□□□ -1.77
VPS29-202ENST00000447578 CDC25CP30307 473 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 BDKRB2P30411 391 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 LIMK1P53667 647 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 SNRPEP62304 92 aaKnown RBP3.99□□□□□ -1.77
VPS29-202ENST00000447578 ACTN3Q08043 901 aaPredicted RBP3.99□□□□□ -1.77
VPS29-202ENST00000447578 UBE2V1Q13404 147 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 SMC1AQ14683 1233 aaKnown RBP3.99□□□□□ -1.77
VPS29-202ENST00000447578 ZRSR1Q15695 479 aaKnown RBP3.99□□□□□ -1.77
VPS29-202ENST00000447578 PKN2Q16513 984 aaKnown RBP3.99□□□□□ -1.77
VPS29-202ENST00000447578 DUSP6Q16828 381 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 SYT16Q17RD7 645 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 KLHL26Q53HC5 615 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 RNASEH2BQ5TBB1 312 aaKnown RBP3.99□□□□□ -1.77
VPS29-202ENST00000447578 ALS2CLQ60I27 953 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 FAM91A1Q658Y4 838 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 TATDN1Q6P1N9 297 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 ZC3HC1Q86WB0 502 aaKnown RBP3.99□□□□□ -1.77
VPS29-202ENST00000447578 DZIP1Q86YF9 867 aaKnown RBP3.99□□□□□ -1.77
VPS29-202ENST00000447578 MIGA1Q8NAN2 632 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 NHLRC2Q8NBF2 726 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 ATAD1Q8NBU5 361 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 GRAPLQ8TC17 118 aaPredicted RBP3.99□□□□□ -1.77
VPS29-202ENST00000447578 KIAA1524Q8TCG1 905 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.99□□□□□ -1.77
VPS29-202ENST00000447578 ATL1Q8WXF7 558 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 RSPH1Q8WYR4 309 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 RND1Q92730 232 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 ATP6V0A1Q93050 837 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 SEPHS2Q99611 448 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 GFI1Q99684 422 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 HAUS8Q9BT25 410 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 KRT23Q9C075 422 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 NAT10Q9H0A0 1025 aaKnown RBP3.99□□□□□ -1.77
VPS29-202ENST00000447578 WNT5BQ9H1J7 359 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 CLK4Q9HAZ1 481 aaKnown RBP3.99□□□□□ -1.77
VPS29-202ENST00000447578 LY9Q9HBG7 655 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 HIF1ANQ9NWT6 349 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 RAI14Q9P0K7 980 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 WNT16Q9UBV4 365 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 CLIP2Q9UDT6 1046 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 CDH7Q9ULB5 785 aa3.99□□□□□ -1.77
VPS29-202ENST00000447578 SNX7Q9UNH6 387 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms