RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 WRBO00258 174 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 C8orf89P0DMQ9 161 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 CCL5P13501 91 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 LIN52Q52LA3 116 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 TNFAIP8L1Q8WVP5 186 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 FRMD6Q96NE9 622 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 ZDHHC18Q9NUE0 388 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 TAS2R1Q9NYW7 299 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 ZDHHC2Q9UIJ5 367 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 H3BSH0 61 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 GNSP15586 552 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 SP140Q13342 867 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 LRRC66Q68CR7 880 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 NAT14Q8WUY8 206 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 COMMD3Q9UBI1 195 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 MAN2B2Q9Y2E5 1009 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 PCDHGA12O60330 932 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 CNTN5O94779 1100 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 NRIP1P48552 1158 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 SGCBQ16585 318 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 MYLK3Q32MK0 819 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 SLC2A7Q6PXP3 512 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 ABHD13Q7L211 337 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 CMASQ8NFW8 434 aaPredicted RBP16.78■□□□□ 0.28
PTPRF-209ENST00000438120 C10orf82Q8WW14 230 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 PKP4Q99569 1192 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 IFT46Q9NQC8 304 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 ABI3Q9P2A4 366 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 CRB2Q5IJ48 1285 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 PHF19Q5T6S3 580 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 ZNF613Q6PF04 617 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 PRICKLE1Q96MT3 831 aaPredicted RBP16.78■□□□□ 0.28
PTPRF-209ENST00000438120 RAB11FIP5Q9BXF6 653 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 TBL1XR1Q9BZK7 514 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 TCF7L1Q9HCS4 588 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 DNAJB9Q9UBS3 223 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 GRIP1Q9Y3R0 1128 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 PDLIM1O00151 329 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 POP7O75817 140 aaKnown RBP16.78■□□□□ 0.28
PTPRF-209ENST00000438120 PRAMEF12O95522 483 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 BCHEP06276 602 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 EIPR1Q53HC9 387 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 LCN1P1Q5VSP4 162 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 LINGO2Q7L985 606 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 OR10G2Q8NGC3 310 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 CPNE3O75131 537 aaKnown RBP16.78■□□□□ 0.28
PTPRF-209ENST00000438120 PTNP21246 168 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 SWI5Q1ZZU3 235 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 CYP27C1Q4G0S4 372 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 LRRTM4Q86VH4 590 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 OR5K1Q8NHB7 308 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 IL4I1Q96RQ9 567 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 TMEM209Q96SK2 561 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 LRRC3Q9BY71 257 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 MKKSQ9NPJ1 570 aaPredicted RBP16.78■□□□□ 0.28
PTPRF-209ENST00000438120 A0A0X1KG70 313 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 CLIC1O00299 241 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 CKMT2P17540 419 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 CDKN1CP49918 316 aaPredicted RBP16.78■□□□□ 0.28
PTPRF-209ENST00000438120 THOC6Q86W42 341 aaKnown RBP16.78■□□□□ 0.28
PTPRF-209ENST00000438120 OR2L3Q8NG85 312 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 UFD1Q92890 307 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 RGMAQ96B86 450 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 ZNF514Q96K75 400 aaPredicted RBP16.78■□□□□ 0.28
PTPRF-209ENST00000438120 ZNF599Q96NL3 588 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 CITED4Q96RK1 184 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 ZSCAN5AQ9BUG6 496 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 SLC32A1Q9H598 525 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 RNF121Q9H920 327 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 MCCC2Q9HCC0 563 aa16.78■□□□□ 0.28
PTPRF-209ENST00000438120 TYRP14679 529 aa16.77■□□□□ 0.28
PTPRF-209ENST00000438120 CSNK2A2P19784 350 aaPredicted RBP16.77■□□□□ 0.28
PTPRF-209ENST00000438120 CCNHP51946 323 aaPredicted RBP16.77■□□□□ 0.28
PTPRF-209ENST00000438120 CNKSR3Q6P9H4 555 aa16.77■□□□□ 0.28
PTPRF-209ENST00000438120 OLFML1Q6UWY5 402 aa16.77■□□□□ 0.28
PTPRF-209ENST00000438120 SLC35F5Q8WV83 523 aa16.77■□□□□ 0.28
PTPRF-209ENST00000438120 LOC730098B7Z3J9 87 aa16.77■□□□□ 0.28
PTPRF-209ENST00000438120 PIGRP01833 764 aa16.77■□□□□ 0.28
PTPRF-209ENST00000438120 SLC7A1P30825 629 aa16.77■□□□□ 0.28
PTPRF-209ENST00000438120 VIPR1P32241 457 aa16.77■□□□□ 0.28
PTPRF-209ENST00000438120 DSTNP60981 165 aa16.77■□□□□ 0.28
PTPRF-209ENST00000438120 PUS10Q3MIT2 529 aaKnown RBP16.77■□□□□ 0.28
PTPRF-209ENST00000438120 ZFP69Q49AA0 526 aa16.77■□□□□ 0.28
PTPRF-209ENST00000438120 TCEAL6Q6IPX3 200 aa16.77■□□□□ 0.28
PTPRF-209ENST00000438120 ZSWIM3Q96MP5 696 aa16.77■□□□□ 0.28
PTPRF-209ENST00000438120 TDP1Q9NUW8 608 aa16.77■□□□□ 0.28
PTPRF-209ENST00000438120 TLL2Q9Y6L7 1015 aa16.77■□□□□ 0.28
PTPRF-209ENST00000438120 ANKRD66B4E2M5 251 aa16.77■□□□□ 0.28
PTPRF-209ENST00000438120 CBFA2T3O75081 653 aa16.77■□□□□ 0.28
PTPRF-209ENST00000438120 ACADLP28330 430 aa16.77■□□□□ 0.28
PTPRF-209ENST00000438120 ALDH3A2P51648 485 aa16.77■□□□□ 0.28
PTPRF-209ENST00000438120 RAB8AP61006 207 aa16.77■□□□□ 0.28
PTPRF-209ENST00000438120 DLG1Q12959 904 aa16.77■□□□□ 0.28
PTPRF-209ENST00000438120 ASTE1Q2TB18 679 aaPredicted RBP16.77■□□□□ 0.28
PTPRF-209ENST00000438120 Q8N9G6 341 aaPredicted RBP16.77■□□□□ 0.28
PTPRF-209ENST00000438120 KCTD13Q8WZ19 329 aa16.77■□□□□ 0.28
PTPRF-209ENST00000438120 DGAT2Q96PD7 388 aa16.77■□□□□ 0.28
PTPRF-209ENST00000438120 SMOQ99835 787 aa16.77■□□□□ 0.28
PTPRF-209ENST00000438120 UTS2RQ9UKP6 389 aa16.77■□□□□ 0.28
PTPRF-209ENST00000438120 TLX3O43711 291 aaPredicted RBP16.77■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms