RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 ARL13AQ5H913 290 aaPredicted RBP7.04□□□□□ -1.28
VPS53-204ENST00000437048 REP15Q6BDI9 236 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 C12orf40Q86WS4 652 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 TMEM143Q96AN5 459 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 IRS2Q9Y4H2 1338 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 RIC1Q4ADV7 1423 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 C22orf31O95567 290 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 PKMP14618 531 aaKnown RBP7.04□□□□□ -1.28
VPS53-204ENST00000437048 MYF6P23409 242 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 RAP2BP61225 183 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 RAB31Q13636 194 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 TRMT11Q7Z4G4 463 aaKnown RBP7.04□□□□□ -1.28
VPS53-204ENST00000437048 GALNT7Q86SF2 657 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 CEP97Q8IW35 865 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 C7orf61Q8IZ16 206 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 HDHD5Q9BXW7 423 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 SEMA4BQ9NPR2 832 aaPredicted RBP7.04□□□□□ -1.28
VPS53-204ENST00000437048 A0A1W2PPW3 197 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 OR10H2O60403 315 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 SLC6A6P31641 620 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 MAELQ96JY0 434 aaKnown RBP7.04□□□□□ -1.28
VPS53-204ENST00000437048 ZNF416Q9BWM5 594 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 ASB8Q9H765 288 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 FAM53CQ9NYF3 392 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 RBMXL2O75526 392 aaKnown RBP7.04□□□□□ -1.28
VPS53-204ENST00000437048 SRCP12931 536 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 PPM1AP35813 382 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 CSTF1Q05048 431 aaKnown RBP7.04□□□□□ -1.28
VPS53-204ENST00000437048 HIST1H2AAQ96QV6 131 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 RAD9AQ99638 391 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 MYOZ2Q9NPC6 264 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 OGDHLQ9ULD0 1010 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 MSCO60682 206 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 CAPN3P20807 821 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 LAMTOR4Q0VGL1 99 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 WDR45BQ5MNZ6 344 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 OR8J1Q8NGP2 316 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 OR1J4Q8NGS1 313 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 SHMT1P34896 483 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 GLP1RP43220 463 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 PRKXP51817 358 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 TAS2R50P59544 299 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 LPCAT3Q6P1A2 487 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 ZNF782Q6ZMW2 699 aaPredicted RBP7.04□□□□□ -1.28
VPS53-204ENST00000437048 OR56A1Q8NGH5 318 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 MYOCQ99972 504 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 ZSCAN5AQ9BUG6 496 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 ZNF304Q9HCX3 659 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 CNTN3Q9P232 1028 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 OR10H1Q9Y4A9 318 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 GXYLT2A0PJZ3 443 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 C20orf202A1L168 122 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 NCF1BA6NI72 391 aaPredicted RBP7.03□□□□□ -1.28
VPS53-204ENST00000437048 NCF1CA8MVU1 366 aaPredicted RBP7.03□□□□□ -1.28
VPS53-204ENST00000437048 HOXB9P17482 250 aaPredicted RBP7.03□□□□□ -1.28
VPS53-204ENST00000437048 XKP51811 444 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 GPAT3Q53EU6 434 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 ARHGAP11AQ6P4F7 1023 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 SLC36A4Q6YBV0 504 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 OTOP1Q7RTM1 612 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 ARMC10Q8N2F6 343 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 ACBD4Q8NC06 268 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 KIAA1143Q96AT1 154 aaPredicted RBP7.03□□□□□ -1.28
VPS53-204ENST00000437048 MTMR9Q96QG7 549 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 TREM1Q9NP99 234 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 HCN4Q9Y3Q4 1203 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 ABCA1O95477 2261 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 DLG5Q8TDM6 1919 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 CHRNA1P02708 482 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 SLC35G4P0C7Q5 338 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 ST3GAL3Q11203 375 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 AMIGO1Q86WK6 493 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 HORMAD2Q8N7B1 307 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 DDX51Q8N8A6 666 aaKnown RBP eCLIP7.03□□□□□ -1.28
VPS53-204ENST00000437048 OR2L5Q8NG80 312 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 NAALAD2Q9Y3Q0 740 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 FAM208AQ9UK61 1670 aaKnown RBP7.03□□□□□ -1.28
VPS53-204ENST00000437048 VSTM5A8MXK1 200 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 SHBGP04278 402 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 BMP1P13497 986 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 L1CAMP32004 1257 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 RALGDSQ12967 914 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 LASP1Q14847 261 aaKnown RBP7.03□□□□□ -1.28
VPS53-204ENST00000437048 CYP2W1Q8TAV3 490 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 OSBPL2Q9H1P3 480 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 TMEM39AQ9NV64 488 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 P2RX2Q9UBL9 471 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 C5orf51A6NDU8 294 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 WASH4PA8MWX3 477 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 PPM1BO75688 479 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 UBBP0CG47 229 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 UBCP0CG48 685 aaKnown RBP7.03□□□□□ -1.28
VPS53-204ENST00000437048 RAB4AP20338 218 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 BAATQ14032 418 aaPredicted RBP7.03□□□□□ -1.28
VPS53-204ENST00000437048 ARL14Q8N4G2 192 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 RIPOR3Q96MK2 946 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 ZNF641Q96N77 438 aaPredicted RBP7.03□□□□□ -1.28
VPS53-204ENST00000437048 OR4K3Q96R72 315 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 GAREM1Q9H706 876 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 A0A1W2PRQ8 180 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms