RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 KCNK6Q9Y257 313 aa20.47■□□□□ 0.87
PTPRF-207ENST00000436724 WDR37Q9Y2I8 494 aa20.47■□□□□ 0.87
PTPRF-207ENST00000436724 TDRKHQ9Y2W6 561 aaKnown RBP20.47■□□□□ 0.87
PTPRF-207ENST00000436724 SEC22BO75396 215 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 CLCNKAP51800 687 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 THOP1P52888 689 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 RPA4Q13156 261 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 CCNIQ14094 377 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 DUS1LQ6P1R4 473 aaKnown RBP20.46■□□□□ 0.87
PTPRF-207ENST00000436724 TMEM154Q6P9G4 183 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 CYP20A1Q6UW02 462 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 NEIL2Q969S2 332 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 UHRF1Q96T88 793 aaPredicted RBP20.46■□□□□ 0.87
PTPRF-207ENST00000436724 IL1RL2Q9HB29 575 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 SLC2A4RGQ9NR83 387 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 NDE1Q9NXR1 346 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 MAP10Q9P2G4 905 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 CA14Q9ULX7 337 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 E7ENX8 843 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 RSL1D1O76021 490 aaKnown RBP20.46■□□□□ 0.87
PTPRF-207ENST00000436724 JUPP14923 745 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 IL9P15248 144 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 VARSP26640 1264 aaKnown RBP20.46■□□□□ 0.87
PTPRF-207ENST00000436724 GNPDA1P46926 289 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 TAP2Q03519 686 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 CEACAM7Q14002 265 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 PTGR1Q14914 329 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 PDCD4Q53EL6 469 aaKnown RBP20.46■□□□□ 0.87
PTPRF-207ENST00000436724 FRG2Q64ET8 278 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 ADNP2Q6IQ32 1131 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 RNF111Q6ZNA4 994 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 RNF165Q6ZSG1 346 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 FRG2BQ96QU4 278 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 LRTM1Q9HBL6 345 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 PRPF19Q9UMS4 504 aaKnown RBP20.46■□□□□ 0.87
PTPRF-207ENST00000436724 SLC17A4Q9Y2C5 497 aa20.46■□□□□ 0.87
PTPRF-207ENST00000436724 RGS19P49795 217 aa20.45■□□□□ 0.86
PTPRF-207ENST00000436724 CCR3P51677 355 aa20.45■□□□□ 0.86
PTPRF-207ENST00000436724 PSME3P61289 254 aa20.45■□□□□ 0.86
PTPRF-207ENST00000436724 RCAN2Q14206 197 aa20.45■□□□□ 0.86
PTPRF-207ENST00000436724 TCEA2Q15560 299 aa20.45■□□□□ 0.86
PTPRF-207ENST00000436724 PIGGQ5H8A4 983 aa20.45■□□□□ 0.86
PTPRF-207ENST00000436724 PTCRAQ6ISU1 281 aaPredicted RBP20.45■□□□□ 0.86
PTPRF-207ENST00000436724 UNC5DQ6UXZ4 953 aa20.45■□□□□ 0.86
PTPRF-207ENST00000436724 KLHDC8AQ8IYD2 350 aa20.45■□□□□ 0.86
PTPRF-207ENST00000436724 PGBD3Q8N328 593 aa20.45■□□□□ 0.86
PTPRF-207ENST00000436724 BTBD1Q9H0C5 482 aa20.45■□□□□ 0.86
PTPRF-207ENST00000436724 FGF22Q9HCT0 170 aa20.45■□□□□ 0.86
PTPRF-207ENST00000436724 DNMT3AQ9Y6K1 912 aaPredicted RBP20.45■□□□□ 0.86
PTPRF-207ENST00000436724 ASPDHA6ND91 283 aa20.45■□□□□ 0.86
PTPRF-207ENST00000436724 GPR89AB7ZAQ6 455 aa20.45■□□□□ 0.86
PTPRF-207ENST00000436724 ANGPT2O15123 496 aa20.45■□□□□ 0.86
PTPRF-207ENST00000436724 GPR89BP0CG08 455 aa20.45■□□□□ 0.86
PTPRF-207ENST00000436724 C7P10643 843 aa20.45■□□□□ 0.86
PTPRF-207ENST00000436724 NPPBP16860 134 aa20.45■□□□□ 0.86
PTPRF-207ENST00000436724 MRPL19P49406 292 aaKnown RBP20.45■□□□□ 0.86
PTPRF-207ENST00000436724 GRIK2Q13002 908 aa20.45■□□□□ 0.86
PTPRF-207ENST00000436724 LIPJQ5W064 366 aa20.45■□□□□ 0.86
PTPRF-207ENST00000436724 CAPN13Q6MZZ7 669 aaPredicted RBP20.45■□□□□ 0.86
PTPRF-207ENST00000436724 LRRC56Q8IYG6 542 aaPredicted RBP20.45■□□□□ 0.86
PTPRF-207ENST00000436724 FAM156AQ8NDB6 213 aa20.45■□□□□ 0.86
PTPRF-207ENST00000436724 NDUFAF1Q9Y375 327 aa20.45■□□□□ 0.86
PTPRF-207ENST00000436724 GPSM3Q9Y4H4 160 aa20.45■□□□□ 0.86
PTPRF-207ENST00000436724 CACNB4O00305 520 aaPredicted RBP20.44■□□□□ 0.86
PTPRF-207ENST00000436724 ANKRD28O15084 1053 aa20.44■□□□□ 0.86
PTPRF-207ENST00000436724 TCN1P20061 433 aaPredicted RBP20.44■□□□□ 0.86
PTPRF-207ENST00000436724 POLR2JP52435 117 aaKnown RBP20.44■□□□□ 0.86
PTPRF-207ENST00000436724 KCNK10P57789 538 aa20.44■□□□□ 0.86
PTPRF-207ENST00000436724 YBX1P67809 324 aaKnown RBP20.44■□□□□ 0.86
PTPRF-207ENST00000436724 MLF2Q15773 248 aaPredicted RBP20.44■□□□□ 0.86
PTPRF-207ENST00000436724 PYCR3Q53H96 274 aa20.44■□□□□ 0.86
PTPRF-207ENST00000436724 CATSPEREQ5SY80 951 aa20.44■□□□□ 0.86
PTPRF-207ENST00000436724 TPRG1LQ5T0D9 272 aa20.44■□□□□ 0.86
PTPRF-207ENST00000436724 TMPRSS11BQ86T26 416 aa20.44■□□□□ 0.86
PTPRF-207ENST00000436724 HIPK4Q8NE63 616 aa20.44■□□□□ 0.86
PTPRF-207ENST00000436724 PYDC1Q8WXC3 89 aa20.44■□□□□ 0.86
PTPRF-207ENST00000436724 GATA6Q92908 595 aa20.44■□□□□ 0.86
PTPRF-207ENST00000436724 MTERF1Q99551 399 aaKnown RBP20.44■□□□□ 0.86
PTPRF-207ENST00000436724 C1orf109Q9NX04 203 aa20.44■□□□□ 0.86
PTPRF-207ENST00000436724 ADA2Q9NZK5 511 aa20.44■□□□□ 0.86
PTPRF-207ENST00000436724 ZIM2Q9NZV7 527 aa20.44■□□□□ 0.86
PTPRF-207ENST00000436724 KCNE2Q9Y6J6 123 aa20.44■□□□□ 0.86
PTPRF-207ENST00000436724 KANSL1LA0AUZ9 987 aa20.44■□□□□ 0.86
PTPRF-207ENST00000436724 IFRD1O00458 451 aaPredicted RBP20.44■□□□□ 0.86
PTPRF-207ENST00000436724 SLC35G4P0C7Q5 338 aa20.44■□□□□ 0.86
PTPRF-207ENST00000436724 CHRNB1P11230 501 aa20.44■□□□□ 0.86
PTPRF-207ENST00000436724 PNLIPRP1P54315 467 aa20.44■□□□□ 0.86
PTPRF-207ENST00000436724 DDX39BQ13838 428 aaKnown RBP20.44■□□□□ 0.86
PTPRF-207ENST00000436724 KIAA0040Q15053 153 aa20.44■□□□□ 0.86
PTPRF-207ENST00000436724 ZNF423Q2M1K9 1284 aa20.44■□□□□ 0.86
PTPRF-207ENST00000436724 TIGD2Q4W5G0 525 aa20.44■□□□□ 0.86
PTPRF-207ENST00000436724 GALNT13Q8IUC8 556 aa20.44■□□□□ 0.86
PTPRF-207ENST00000436724 RAD51AP1Q96B01 352 aa20.44■□□□□ 0.86
PTPRF-207ENST00000436724 UGDHO60701 494 aa20.43■□□□□ 0.86
PTPRF-207ENST00000436724 XRCC1P18887 633 aaPredicted RBP20.43■□□□□ 0.86
PTPRF-207ENST00000436724 IZUMO2Q6UXV1 221 aa20.43■□□□□ 0.86
PTPRF-207ENST00000436724 DCUN1D3Q8IWE4 304 aa20.43■□□□□ 0.86
PTPRF-207ENST00000436724 LIX1Q8N485 282 aa20.43■□□□□ 0.86
PTPRF-207ENST00000436724 OR2T34Q8NGX1 318 aa20.43■□□□□ 0.86
PTPRF-207ENST00000436724 OR5K2Q8NHB8 316 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms