RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 DCP2Q8IU60 420 aaKnown RBP8.43□□□□□ -1.06
USP40-203ENST00000427112 SYT12Q8IV01 421 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 MMP21Q8N119 569 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 TTC29Q8NA56 475 aaPredicted RBP8.43□□□□□ -1.06
USP40-203ENST00000427112 DOK4Q8TEW6 326 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 BCL7CQ8WUZ0 217 aaPredicted RBP8.43□□□□□ -1.06
USP40-203ENST00000427112 COPS8Q99627 209 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 PKMYT1Q99640 499 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 CEP44Q9C0F1 390 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 ARNT2Q9HBZ2 717 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 RLIMQ9NVW2 624 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 ERVK13-1Q9NX77 482 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 GPR83Q9NYM4 423 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 MALT1Q9UDY8 824 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 MAGEL2Q9UJ55 1249 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 SCML2Q9UQR0 700 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 ZNF99A8MXY4 864 aaPredicted RBP8.42□□□□□ -1.06
USP40-203ENST00000427112 CLDN25C9JDP6 229 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 EPB42P16452 691 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 TTPAP49638 278 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 MC1RQ01726 317 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 TRAF3Q13114 568 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 SF3B4Q15427 424 aaKnown RBP eCLIP8.42□□□□□ -1.063e-17■■■■■ 56.8
USP40-203ENST00000427112 MED22Q15528 200 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 CCDC85BQ15834 202 aaPredicted RBP8.42□□□□□ -1.06
USP40-203ENST00000427112 MOGQ16653 247 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 PTCHD3Q3KNS1 767 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 TMEM53Q6P2H8 277 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 SPATA19Q7Z5L4 167 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 HIPK1Q86Z02 1210 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 P3H2Q8IVL5 708 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 OR8H2Q8N162 312 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 MCFD2Q8NI22 146 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 SORBS1Q9BX66 1292 aaKnown RBP8.42□□□□□ -1.06
USP40-203ENST00000427112 ACPTQ9BZG2 426 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 OR51E2Q9H255 320 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 ATP13A3Q9H7F0 1226 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 ZFYVE1Q9HBF4 777 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 KRT84Q9NSB2 600 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 TMEM184CQ9NVA4 438 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 ABT1Q9ULW3 272 aaKnown RBP8.42□□□□□ -1.06
USP40-203ENST00000427112 BTBD3Q9Y2F9 522 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 MAP4K5Q9Y4K4 846 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 PCDHGA3Q9Y5H0 932 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 CPQQ9Y646 472 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 ARID1AO14497 2285 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 TMEM202A6NGA9 273 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 SLC38A8A6NNN8 435 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 H3BM21 787 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 TSC22D2O75157 780 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 ALDH2P05091 517 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 GRK3P35626 688 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 DAPP51397 102 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 EEFSECP57772 596 aaKnown RBP8.42□□□□□ -1.06
USP40-203ENST00000427112 TJAP1Q5JTD0 557 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.42□□□□□ -1.06
USP40-203ENST00000427112 SLC16A12Q6ZSM3 486 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 UBE2R2Q712K3 238 aaPredicted RBP8.42□□□□□ -1.06
USP40-203ENST00000427112 SERINC5Q86VE9 423 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 TMEM126BQ8IUX1 230 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 BPIFB1Q8TDL5 484 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 FAR1Q8WVX9 515 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 LINC01599Q8WXQ3 324 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 TOP1MTQ969P6 601 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 TTPALQ9BTX7 342 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 UGT2B28Q9BY64 529 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 FAM126AQ9BYI3 521 aaPredicted RBP8.42□□□□□ -1.06
USP40-203ENST00000427112 IL26Q9NPH9 171 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 DKK3Q9UBP4 350 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 PPT2Q9UMR5 302 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 C16orf96A6NNT2 1141 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 WWP2O00308 870 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 AP3D1O14617 1153 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 FPGTO14772 594 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 PQBP1O60828 265 aaKnown RBP8.42□□□□□ -1.06
USP40-203ENST00000427112 OXSR1O95747 527 aaPredicted RBP8.42□□□□□ -1.06
USP40-203ENST00000427112 FHP07954 510 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 STSP08842 583 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 ALPPL2P10696 532 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 CDH12P55289 794 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 TAF1AQ15573 450 aaPredicted RBP8.42□□□□□ -1.06
USP40-203ENST00000427112 NFE2Q16621 373 aaPredicted RBP8.42□□□□□ -1.06
USP40-203ENST00000427112 USP39Q53GS9 565 aaKnown RBP8.42□□□□□ -1.06
USP40-203ENST00000427112 ZNF852Q6ZMS4 543 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 P2RY8Q86VZ1 359 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 ZNF683Q8IZ20 524 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 SCML4Q8N228 414 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 CELF5Q8N6W0 485 aaKnown RBP8.42□□□□□ -1.06
USP40-203ENST00000427112 ZNF548Q8NEK5 533 aaPredicted RBP8.42□□□□□ -1.06
USP40-203ENST00000427112 OR9Q2Q8NGE9 314 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 VANGL1Q8TAA9 524 aaPredicted RBP8.42□□□□□ -1.06
USP40-203ENST00000427112 OTULINQ96BN8 352 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 ALPK1Q96QP1 1244 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 TSEN34Q9BSV6 310 aaKnown RBP8.42□□□□□ -1.06
USP40-203ENST00000427112 DNAJB9Q9UBS3 223 aa8.42□□□□□ -1.06
USP40-203ENST00000427112 CFAP20Q9Y6A4 193 aaKnown RBP8.42□□□□□ -1.06
USP40-203ENST00000427112 FAM92AA1XBS5 289 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 UNCXA6NJT0 531 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 PLK4O00444 970 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 RGS14O43566 566 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms