RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 HYKKA2RU49 373 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 FITM1A5D6W6 292 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 RASGRF2O14827 1237 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 HNRNPRO43390 633 aaKnown RBP7.73□□□□□ -1.17
VIM-202ENST00000421459 KLHL41O60662 606 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 C1orf105O95561 183 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 FTCDO95954 541 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 ALBP02768 609 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 F7P08709 466 aaPredicted RBP7.73□□□□□ -1.17
VIM-202ENST00000421459 PIM1P11309 404 aaPredicted RBP7.73□□□□□ -1.17
VIM-202ENST00000421459 MST1P26927 711 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 TDGF1P3P51864 188 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 EFNA3P52797 238 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 CRADDP78560 199 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 MFAP5Q13361 173 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 GRM7Q14831 915 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 TLR1Q15399 786 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 SYT16Q17RD7 645 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 DNAJC21Q5F1R6 531 aaKnown RBP7.73□□□□□ -1.17
VIM-202ENST00000421459 IRAK1BP1Q5VVH5 260 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 ATG9BQ674R7 924 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 ZNF324BQ6AW86 544 aaPredicted RBP7.73□□□□□ -1.17
VIM-202ENST00000421459 FBXO42Q6P3S6 717 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 FAM180AQ6UWF9 173 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 ISLR2Q6UXK2 745 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 RAD9BQ6WBX8 426 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 LRRC57Q8N9N7 239 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 TTC29Q8NA56 475 aaPredicted RBP7.73□□□□□ -1.17
VIM-202ENST00000421459 SLC35B2Q8TB61 432 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 DENND1AQ8TEH3 1009 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 FAM136AQ96C01 138 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 MIEF2Q96C03 454 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 C10orf90Q96M02 699 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 ACAT2Q9BWD1 397 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 YIPF2Q9BWQ6 316 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 CARD6Q9BX69 1037 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 TSPY26PQ9H489 355 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 ZNF304Q9HCX3 659 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 CHRAC1Q9NRG0 131 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 SEMA3GQ9NS98 782 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 GALPQ9UBC7 116 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 COPG2Q9UBF2 871 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 SLC39A10Q9ULF5 831 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 TTC7AQ9ULT0 858 aaPredicted RBP7.73□□□□□ -1.17
VIM-202ENST00000421459 EPN1Q9Y6I3 576 aaPredicted RBP7.73□□□□□ -1.17
VIM-202ENST00000421459 HIVEP3Q5T1R4 2406 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 DCHS2Q6V1P9 2916 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 CCDC88CQ9P219 2028 aa7.73□□□□□ -1.17
VIM-202ENST00000421459 ADGRG4Q8IZF6 3080 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 TRGV8A0A0C4DH27 118 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 QSOX1O00391 747 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 PCDH17O14917 1159 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 ZNHIT1O43257 154 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 SLCO2B1O94956 709 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 S1PR4O95977 384 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 HPP00738 406 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 STATHP02808 62 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 PTMAP06454 111 aaKnown RBP7.72□□□□□ -1.17
VIM-202ENST00000421459 ZSCAN5DPP0CG00 497 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 PRR35P0CG20 571 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 ITGAMP11215 1152 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 COX6A1P12074 109 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 ACPPP15309 386 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 ELAVL4P26378 380 aaKnown RBP7.72□□□□□ -1.17
VIM-202ENST00000421459 CYLC1P35663 651 aaPredicted RBP7.72□□□□□ -1.17
VIM-202ENST00000421459 SOX11P35716 441 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 PER3P56645 1201 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 ARG2P78540 354 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 PMP22Q01453 160 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 PLOD1Q02809 727 aaPredicted RBP7.72□□□□□ -1.17
VIM-202ENST00000421459 CDH17Q12864 832 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 KLF1Q13351 362 aaPredicted RBP7.72□□□□□ -1.17
VIM-202ENST00000421459 CDSNQ15517 529 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 HKDC1Q2TB90 917 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 FASTKD1Q53R41 847 aaKnown RBP7.72□□□□□ -1.17
VIM-202ENST00000421459 ZC3H12BQ5HYM0 836 aaKnown RBP7.72□□□□□ -1.17
VIM-202ENST00000421459 TCTE1Q5JU00 501 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 CNSTQ6PJW8 725 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 AFTPHQ6ULP2 937 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 SUSD1Q6UWL2 747 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 CES3Q6UWW8 571 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 UNC5DQ6UXZ4 953 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 PPP1R21Q6ZMI0 780 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 DCUN1D3Q8IWE4 304 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 KBTBD2Q8IY47 623 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 CCDC170Q8IYT3 715 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 SLC34A3Q8N130 599 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 BCORP1Q8N888 145 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 OR2L3Q8NG85 312 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 OR2A1Q8NGT9 310 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 SKA2Q8WVK7 121 aaPredicted RBP7.72□□□□□ -1.17
VIM-202ENST00000421459 ASZ1Q8WWH4 475 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 ITLN2Q8WWU7 325 aaPredicted RBP7.72□□□□□ -1.17
VIM-202ENST00000421459 NACC2Q96BF6 587 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 SLC22A18Q96BI1 424 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 LRRC45Q96CN5 670 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 PPP1R2P1Q96PQ5 205 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 LMF1Q96S06 567 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 MRM3Q9HC36 420 aaKnown RBP7.72□□□□□ -1.17
VIM-202ENST00000421459 LUC7LQ9NQ29 371 aaKnown RBP7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms