RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 PTPRRQ15256 657 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 WSCD2Q2TBF2 565 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 TMEM198Q66K66 360 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 ATG9BQ674R7 924 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 LAYNQ6UX15 382 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 MBOAT1Q6ZNC8 495 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 AQP12AQ8IXF9 295 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 SLC13A3Q8WWT9 602 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 NCLNQ969V3 563 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 THUMPD3Q9BV44 507 aaKnown RBP8.15□□□□□ -1.11
USP54-203ENST00000418501 HELZP42694 1942 aaKnown RBP8.15□□□□□ -1.11
USP54-203ENST00000418501 ARNTLO00327 626 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 CLCNKAP51800 687 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 ARHGDIAP52565 204 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 HK3P52790 923 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 CTBSQ01459 385 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 DMPKQ09013 629 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 NFATC4Q14934 902 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 PLA2G4EQ3MJ16 856 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 UGT3A2Q3SY77 523 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 FAM124AQ86V42 546 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 C11orf74Q86VG3 221 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 HID1Q8IV36 788 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 SLC44A3Q8N4M1 653 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 SPDYE1Q8NFV5 336 aaPredicted RBP8.15□□□□□ -1.11
USP54-203ENST00000418501 ZFP28Q8NHY6 868 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 ESAMQ96AP7 390 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 OR52E6Q96RD3 313 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 NPAS2Q99743 824 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 C1orf50Q9BV19 199 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 NT5DC2Q9H857 520 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 CARS2Q9HA77 564 aaKnown RBP8.15□□□□□ -1.11
USP54-203ENST00000418501 ACSS2Q9NR19 701 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 IMP3Q9NV31 184 aaKnown RBP8.15□□□□□ -1.11
USP54-203ENST00000418501 FAM120CQ9NX05 1096 aaKnown RBP8.15□□□□□ -1.11
USP54-203ENST00000418501 SPASTQ9UBP0 616 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 TMEM98Q9Y2Y6 226 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 A0A0U1RQS6 177 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 EPN2O95208 641 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 EGFP01133 1207 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 ACP5P13686 325 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 PRPH2P23942 346 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 KIR2DL1P43626 348 aaPredicted RBP8.14□□□□□ -1.11
USP54-203ENST00000418501 RGS1Q08116 209 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 PLCL1Q15111 1095 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 PGS1Q32NB8 556 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 LETMD1Q6P1Q0 360 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 NXPE4Q6UWF7 544 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 SLC36A4Q6YBV0 504 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 RGL4Q8IZJ4 473 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 LIX1Q8N485 282 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 OR52B6Q8NGF0 335 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 OR8J3Q8NGG0 315 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 RPLP0P6Q8NHW5 317 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 HMGB4Q8WW32 186 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 DNAJC9Q8WXX5 260 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 ZUFSPQ96AP4 578 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 FAM120BQ96EK7 910 aaKnown RBP8.14□□□□□ -1.11
USP54-203ENST00000418501 COX14Q96I36 57 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 NSMCE2Q96MF7 247 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 TMEM79Q9BSE2 394 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 COPS7BQ9H9Q2 264 aaPredicted RBP8.14□□□□□ -1.11
USP54-203ENST00000418501 S100A14Q9HCY8 104 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 MIEF1Q9NQG6 463 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 SLC7A8Q9UHI5 535 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 MCM8Q9UJA3 840 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 PSMD13Q9UNM6 376 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 SNX13Q9Y5W8 968 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 NUP210Q8TEM1 1887 aaPredicted RBP8.14□□□□□ -1.11
USP54-203ENST00000418501 CHD5Q8TDI0 1954 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 FOXE1O00358 373 aaPredicted RBP8.14□□□□□ -1.11
USP54-203ENST00000418501 OR7A17O14581 309 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 TAPBPO15533 448 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 MBTPS2O43462 519 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 GPIP06744 558 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 GPX3P22352 226 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 NME5P56597 212 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 CLDN8P56748 225 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 SLBPQ14493 270 aaKnown RBP eCLIP8.14□□□□□ -1.11
USP54-203ENST00000418501 GAB4Q2WGN9 574 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 ENPP7Q6UWV6 458 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 RFLNAQ6ZTI6 216 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 GJD3Q8N144 294 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 USP7Q93009 1102 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 MTERF3Q96E29 417 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 UHRF1Q96T88 793 aaPredicted RBP8.14□□□□□ -1.11
USP54-203ENST00000418501 GPR45Q9Y5Y3 372 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 UBFD1O14562 309 aaKnown RBP8.14□□□□□ -1.11
USP54-203ENST00000418501 HNRNPRO43390 633 aaKnown RBP8.14□□□□□ -1.11
USP54-203ENST00000418501 KRT75O95678 551 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 GDF5P43026 501 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 RAB28P51157 221 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 PCDH1Q08174 1060 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 CPTPQ5TA50 214 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 SCIMPQ6UWF3 145 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 IKBIPQ70UQ0 350 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 SLC30A8Q8IWU4 369 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 SAMD14Q8IZD0 417 aaPredicted RBP8.14□□□□□ -1.11
USP54-203ENST00000418501 IL17RCQ8NAC3 791 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 OR5K2Q8NHB8 316 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms