RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 VIMP08670 466 aaKnown RBP13.77□□□□□ -0.21
SF3B1-204ENST00000414963 CHRM5P08912 532 aaPredicted RBP13.77□□□□□ -0.21
SF3B1-204ENST00000414963 PNLIPP16233 465 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 GNAZP19086 355 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 GPR3P46089 330 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 CCR10P46092 362 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 HK2P52789 917 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 ATXN3P54252 364 aaPredicted RBP13.77□□□□□ -0.21
SF3B1-204ENST00000414963 EPHA4P54764 986 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 TP53BP1Q12888 1972 aaPredicted RBP13.77□□□□□ -0.21
SF3B1-204ENST00000414963 TRAF3Q13114 568 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 SLC14A1Q13336 389 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 KIR2DS3Q14952 304 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 TBCCQ15814 346 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 CSRP2Q16527 193 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 PRAMEF13Q5VWM6 474 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 SUSD1Q6UWL2 747 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 GPRIN3Q6ZVF9 776 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 CRLF3Q8IUI8 442 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 LRRC34Q8IZ02 419 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 CHCHD4Q8N4Q1 142 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 SNX31Q8N9S9 440 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 OR2A1Q8NGT9 310 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 SLC22A18Q96BI1 424 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 GRAMD1AQ96CP6 724 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 WDR34Q96EX3 536 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 MAGEB10Q96LZ2 347 aaPredicted RBP13.77□□□□□ -0.21
SF3B1-204ENST00000414963 EPN3Q9H201 632 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 EHD1Q9H4M9 534 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 ZNF225Q9UK10 706 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 PCDHB11Q9Y5F2 797 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 CABIN1Q9Y6J0 2220 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 WDFY4Q6ZS81 3184 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 TMEM131Q92545 1883 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 LY6G6EA0A0G2JKS1 128 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 PROB1E7EW31 1015 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 MATN2O00339 956 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 BTN3A3O00478 584 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 SIGLEC6O43699 453 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 EBLN1P0CF75 366 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 TSPAN8P19075 237 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 PEBP1P30086 187 aaKnown RBP13.76□□□□□ -0.21
SF3B1-204ENST00000414963 RPL14P50914 215 aaKnown RBP13.76□□□□□ -0.21
SF3B1-204ENST00000414963 CCNG1P51959 295 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 SEC24CP53992 1094 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 ERVPABLB-1P60509 514 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 ABATP80404 500 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 PRDX1Q06830 199 aaKnown RBP13.76□□□□□ -0.21
SF3B1-204ENST00000414963 PLCL1Q15111 1095 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 NR0B2Q15466 257 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 GGTA1PQ4G0N0 100 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 KLHL35Q6PF15 583 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 SLCO4C1Q6ZQN7 724 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 FAM47EQ6ZV65 393 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 SYVN1Q86TM6 617 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 CUZD1Q86UP6 607 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 C2orf73Q8N5S3 287 aaPredicted RBP13.76□□□□□ -0.21
SF3B1-204ENST00000414963 ZNF781Q8N8C0 355 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 LMNTD1Q8N9Z9 388 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 L3MBTL4Q8NA19 623 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 ABHD11Q8NFV4 315 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 OR52B6Q8NGF0 335 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 FLVCR1-AS1Q8TAF5 88 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 NEIL2Q969S2 332 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 APOLD1Q96LR9 279 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 SLC38A3Q99624 504 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 EPB41L1Q9H4G0 881 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 MID1IP1Q9NPA3 183 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 SPHK1Q9NYA1 384 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 PSD3Q9NYI0 1048 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 LRIT1Q9P2V4 623 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 ZDHHC2Q9UIJ5 367 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 PADI4Q9UM07 663 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 DYRK1BQ9Y463 629 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 TRAF6Q9Y4K3 522 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 RNF215Q9Y6U7 377 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 U3KQA8 63 aa13.76□□□□□ -0.21
SF3B1-204ENST00000414963 A0A1B0GTL3 188 aa13.75□□□□□ -0.21
SF3B1-204ENST00000414963 PIPSLA2A3N6 862 aa13.75□□□□□ -0.21
SF3B1-204ENST00000414963 OR6C74A6NCV1 312 aa13.75□□□□□ -0.21
SF3B1-204ENST00000414963 RHPN2P1A8MT19 583 aa13.75□□□□□ -0.21
SF3B1-204ENST00000414963 SLCO1B7G3V0H7 640 aa13.75□□□□□ -0.21
SF3B1-204ENST00000414963 CDX4O14627 284 aaPredicted RBP13.75□□□□□ -0.21
SF3B1-204ENST00000414963 CLGNO14967 610 aa13.75□□□□□ -0.21
SF3B1-204ENST00000414963 FOXD2O60548 495 aaPredicted RBP13.75□□□□□ -0.21
SF3B1-204ENST00000414963 PRAMEF4O60810 478 aa13.75□□□□□ -0.21
SF3B1-204ENST00000414963 CCNDBP1O95273 360 aa13.75□□□□□ -0.21
SF3B1-204ENST00000414963 CLDN9O95484 217 aa13.75□□□□□ -0.21
SF3B1-204ENST00000414963 ENO1P06733 434 aaKnown RBP13.75□□□□□ -0.21
SF3B1-204ENST00000414963 DRD4P21917 467 aa13.75□□□□□ -0.21
SF3B1-204ENST00000414963 TGM1P22735 817 aa13.75□□□□□ -0.21
SF3B1-204ENST00000414963 HRH2P25021 359 aa13.75□□□□□ -0.21
SF3B1-204ENST00000414963 MPSTP25325 297 aa13.75□□□□□ -0.21
SF3B1-204ENST00000414963 BIRC2Q13490 618 aa13.75□□□□□ -0.21
SF3B1-204ENST00000414963 SF3A2Q15428 464 aaKnown RBP13.75□□□□□ -0.21
SF3B1-204ENST00000414963 RBBP7Q16576 425 aa13.75□□□□□ -0.21
SF3B1-204ENST00000414963 PROX2Q3B8N5 592 aa13.75□□□□□ -0.21
SF3B1-204ENST00000414963 INAVAQ3KP66 663 aa13.75□□□□□ -0.21
SF3B1-204ENST00000414963 UGT3A2Q3SY77 523 aa13.75□□□□□ -0.21
SF3B1-204ENST00000414963 PRAMEF9Q5VWM5 478 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms