RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 INSIG1O15503 277 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 DUX4L2P0CJ85 424 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 DUX4L3P0CJ86 424 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 DUX4L4P0CJ87 422 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 DUX4L5P0CJ88 424 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 DUX4L6P0CJ89 424 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 DUX4L7P0CJ90 424 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 TYMPP19971 482 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 OR1D2P34982 312 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 SLC26A3P40879 764 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 ALDH9A1P49189 494 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 ALDH3A2P51648 485 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 SCD5Q86SK9 330 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 SETD9Q8NE22 299 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 ZUFSPQ96AP4 578 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 TRNT1Q96Q11 434 aaKnown RBP11.66□□□□□ -0.54
HMGB1-206ENST00000405805 DUX4Q9UBX2 424 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 PTBP2Q9UKA9 531 aaKnown RBP11.66□□□□□ -0.54
HMGB1-206ENST00000405805 FAM172BPA6NC97 362 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 PER2O15055 1255 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 UMPSP11172 480 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 MYF6P23409 242 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 PRKCZQ05513 592 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 BCL2L1Q07817 233 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 CD47Q08722 323 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 VEPH1Q14D04 833 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 C6orf141Q5SZD1 244 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 OR4F3Q6IEY1 312 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 CES5AQ6NT32 575 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 LYSMD3Q7Z3D4 306 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 FAM86B1Q8N7N1 296 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 JPH3Q8WXH2 748 aaPredicted RBP11.66□□□□□ -0.54
HMGB1-206ENST00000405805 NCSTNQ92542 709 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 GINS4Q9BRT9 223 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 TUBB1Q9H4B7 451 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 AGPAT4Q9NRZ5 378 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 VAPAQ9P0L0 249 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 GABRQQ9UN88 632 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 ERGIC3Q9Y282 383 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 RAB19A4D1S5 217 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 GBAP04062 536 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 ANXA5P08758 320 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 CD36P16671 472 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 PLA2G16P53816 162 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 ERVPABLB-1P60509 514 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 MXD1Q05195 221 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 TCEA2Q15560 299 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 PYDC2Q56P42 97 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 INTS11Q5TA45 600 aaKnown RBP11.66□□□□□ -0.54
HMGB1-206ENST00000405805 LETMD1Q6P1Q0 360 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 EPHX4Q8IUS5 362 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 TTC29Q8NA56 475 aaPredicted RBP11.66□□□□□ -0.54
HMGB1-206ENST00000405805 ATL1Q8WXF7 558 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 ZNF285Q96NJ3 590 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 TREX1Q9NSU2 369 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 GTF2IRD1Q9UHL9 959 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 NUP50Q9UKX7 468 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 ABCG2Q9UNQ0 655 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 POLHQ9Y253 713 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 PCDHB7Q9Y5E2 793 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 CEP350Q5VT06 3117 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 FAM240BA0A1B0GVZ2 78 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 ZNF99A8MXY4 864 aaPredicted RBP11.65□□□□□ -0.54
HMGB1-206ENST00000405805 ZNF197O14709 1029 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 PGRP06401 933 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 HOXB8P17481 243 aaPredicted RBP11.65□□□□□ -0.54
HMGB1-206ENST00000405805 CORO1AP31146 461 aaKnown RBP11.65□□□□□ -0.54
HMGB1-206ENST00000405805 HNF4AP41235 474 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 SMAD3P84022 425 aaKnown RBP11.65□□□□□ -0.54
HMGB1-206ENST00000405805 IL10RBQ08334 325 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 TP53BP2Q13625 1128 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 SPDYE7PQ495Y7 208 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 BBS7Q8IWZ6 715 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 TIGD4Q8IY51 512 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 MINDY1Q8N5J2 469 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 SH3KBP1Q96B97 665 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 SMOC2Q9H3U7 446 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 FAM124BQ9H5Z6 455 aaPredicted RBP11.65□□□□□ -0.54
HMGB1-206ENST00000405805 SDR39U1Q9NRG7 319 aaPredicted RBP11.65□□□□□ -0.54
HMGB1-206ENST00000405805 DNAJB9Q9UBS3 223 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 ING4Q9UNL4 249 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 CENPFP49454 3210 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 C5orf58C9J3I9 102 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 RGS10O43665 173 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 RFPL2O75678 378 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 STK16O75716 305 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 CCNYL3P0C7X3 344 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 DGKAP23743 735 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 ALDH7A1P49419 539 aaKnown RBP11.65□□□□□ -0.54
HMGB1-206ENST00000405805 EEFSECP57772 596 aaKnown RBP11.65□□□□□ -0.54
HMGB1-206ENST00000405805 RPS3AP61247 264 aaKnown RBP11.65□□□□□ -0.54
HMGB1-206ENST00000405805 PPP2R2BQ00005 443 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 SREBF2Q12772 1141 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 CSTF3Q12996 717 aaKnown RBP11.65□□□□□ -0.54
HMGB1-206ENST00000405805 APOFQ13790 326 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 C5orf22Q49AR2 442 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 TXNDC11Q6PKC3 985 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 CCBE1Q6UXH8 406 aaPredicted RBP11.65□□□□□ -0.54
HMGB1-206ENST00000405805 PCNPQ8WW12 178 aaKnown RBP11.65□□□□□ -0.54
HMGB1-206ENST00000405805 GTPBP3Q969Y2 492 aaKnown RBP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms