RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 GH2P01242 217 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 IL1BP01584 269 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 FESP07332 822 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 CELA2AP08217 269 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 RAB40ALP0C0E4 278 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 DANCRP0C864 163 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 RALAP11233 206 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 RPA2P15927 270 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 ITPKBP27987 946 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 CAPGP40121 348 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 PRMT2P55345 433 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 HUNKP57058 714 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 RHAGQ02094 409 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 ARHGAP1Q07960 439 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 STXBP2Q15833 593 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 FAM174BQ3ZCQ3 159 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 CCNYL2Q5T2Q4 361 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 TEDDM1Q5T9Z0 273 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 PRAMEF20Q5VT98 475 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 LRRC38Q5VT99 294 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 METTL11BQ5VVY1 283 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 PRAMEF7Q5VXH5 474 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 KLC3Q6P597 504 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 HAPLN4Q86UW8 402 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 GPR180Q86V85 440 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 GRAMD2AQ8IUY3 354 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 WDR49Q8IV35 697 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 KRT222Q8N1A0 295 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 C8orf58Q8NAV2 365 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 UBLCP1Q8WVY7 318 aaPredicted RBP3.96□□□□□ -1.78
HMGB1-204ENST00000399489 ATL1Q8WXF7 558 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 DDB2Q92466 427 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 FAM46BQ96A09 425 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 SLCO4A1Q96BD0 722 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 C19orf60Q96EN9 201 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 CDKN2AIPNLQ96HQ2 116 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 ZNF778Q96MU6 729 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 FRG2BQ96QU4 278 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 SIN3AQ96ST3 1273 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 DDOQ99489 341 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 SH3GL1Q99961 368 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 ZNF559Q9BR84 538 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 MXRA8Q9BRK3 442 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 FAM213AQ9BRX8 229 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 ATG101Q9BSB4 218 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 IFT27Q9BW83 186 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 ACTRT3Q9BYD9 372 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 FRMD8Q9BZ67 464 aaPredicted RBP3.96□□□□□ -1.78
HMGB1-204ENST00000399489 SEMA4CQ9C0C4 833 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 HAUS4Q9H6D7 363 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 ACTR8Q9H981 624 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 DONSONQ9NYP3 566 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 EHD3Q9NZN3 535 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 FLRT1Q9NZU1 646 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 ENTPD4Q9Y227 616 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 IFT140Q96RY7 1462 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 TNIKQ9UKE5 1360 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 CPED1A4D0V7 1026 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 DUXAA6NLW8 204 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 E9PI62 339 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 AP4M1O00189 453 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 PRYO14603 147 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 PRRG1O14668 218 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 CETN3O15182 167 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 MAPK13O15264 365 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 B4GALT2O60909 372 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 SERPINA3P01011 423 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 HLA-DQA2P01906 255 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 CSF2P04141 144 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 ICAM1P05362 532 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 HMBSP08397 361 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 RFPL3SP0C7P2 107 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 UBTFL6P0CB48 400 aaPredicted RBP3.95□□□□□ -1.78
HMGB1-204ENST00000399489 STAG3L3P0CL85 134 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 SPP1P10451 314 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 NR2F6P10588 404 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 PCNAP12004 261 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 NDUFB7P17568 137 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 PRCPP42785 496 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 IER3P46695 156 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 ATP5IP56385 69 aaPredicted RBP3.95□□□□□ -1.78
HMGB1-204ENST00000399489 SUMO2P61956 95 aaKnown RBP3.95□□□□□ -1.78
HMGB1-204ENST00000399489 SREBF2Q12772 1141 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 SPOUT1Q5T280 376 aaKnown RBP3.95□□□□□ -1.78
HMGB1-204ENST00000399489 CYB5D1Q6P9G0 228 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 B3GLCTQ6Y288 498 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 DPPA4Q7L190 304 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 C1QL2Q7Z5L3 287 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 DTX2Q86UW9 622 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 ZCCHC9Q8N567 271 aaKnown RBP3.95□□□□□ -1.78
HMGB1-204ENST00000399489 AADATQ8N5Z0 425 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 ANKRD13CQ8N6S4 541 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 LINC00469Q8N7U9 141 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 OR52J3Q8NH60 311 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 WDR20Q8TBZ3 569 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 APBB2Q92870 758 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 SPDL1Q96EA4 605 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 PGM2Q96G03 612 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 C8orf76Q96K31 380 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 ZNF583Q96ND8 569 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms