RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 SPIN1Q9Y657 262 aaPredicted RBP11.17□□□□□ -0.62
PTPRF-203ENST00000372407 PPEF2O14830 753 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 AKT2P31751 481 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 RORCP51449 518 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 PPP1R8Q12972 351 aaKnown RBP11.17□□□□□ -0.62
PTPRF-203ENST00000372407 SMARCD3Q6STE5 483 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 OXR1Q8N573 874 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 COX18Q8N8Q8 333 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 MINDY2Q8NBR6 621 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 DDX1Q92499 740 aaKnown RBP11.17□□□□□ -0.62
PTPRF-203ENST00000372407 SLC29A3Q9BZD2 475 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 DCSTAMPQ9H295 470 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 GKN1Q9NS71 199 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 DUS2Q9NX74 493 aaKnown RBP11.17□□□□□ -0.62
PTPRF-203ENST00000372407 SLC2A6Q9UGQ3 507 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 MKL2Q9ULH7 1088 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 H3BSA7 217 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 J3KR12 359 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 CDC7O00311 574 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 RASGRP1O95267 797 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 SRPRAP08240 638 aaKnown RBP11.17□□□□□ -0.62
PTPRF-203ENST00000372407 KCNE1P15382 129 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 ENGP17813 658 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 CPN2P22792 545 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 GRK6P43250 576 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 ARHGDIBP52566 201 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 SP2Q02086 613 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 SCARB2Q14108 478 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 ATAT1Q5SQI0 421 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 KLHDC10Q6PID8 442 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 CHST4Q8NCG5 386 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 EXO5Q9H790 373 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 ADAP2Q9NPF8 381 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 PAK6Q9NQU5 681 aaPredicted RBP11.17□□□□□ -0.62
PTPRF-203ENST00000372407 TMEM9Q9P0T7 183 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 CDH7Q9ULB5 785 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 DAPL1A0PJW8 107 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 ANKRD66B4E2M5 251 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 WNT9AO14904 365 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 CSNK2A2P19784 350 aaPredicted RBP11.16□□□□□ -0.62
PTPRF-203ENST00000372407 GGT5P36269 586 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 CSKP41240 450 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 TUBA4AP68366 448 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 ADAM17P78536 824 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 SEMG2Q02383 582 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 SLBPQ14493 270 aaKnown RBP eCLIP11.16□□□□□ -0.62
PTPRF-203ENST00000372407 PCLAFQ15004 111 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 SWI5Q1ZZU3 235 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 CARD16Q5EG05 197 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 TPGS2Q68CL5 300 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 SLC30A6Q6NXT4 461 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 LYSMD3Q7Z3D4 306 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 NUDT13Q86X67 352 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 ZC3H3Q8IXZ2 948 aaKnown RBP11.16□□□□□ -0.62
PTPRF-203ENST00000372407 UBE2J2Q8N2K1 259 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 PQLC3Q8N755 202 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 KREMEN2Q8NCW0 462 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 KIAA1191Q96A73 305 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 ZSWIM3Q96MP5 696 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 IFT27Q9BW83 186 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 OR2AG1Q9H205 316 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 SMOC2Q9H3U7 446 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 TMLHEQ9NVH6 421 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 STYXL1Q9Y6J8 313 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 MYO9BQ13459 2157 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 ACOX3O15254 700 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 FPR1P21462 350 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 MPIP34949 423 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 HSD17B2P37059 387 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 SNAP47Q5SQN1 464 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 OR4F3Q6IEY1 312 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 RASSF6Q6ZTQ3 369 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 ZCCHC10Q8TBK6 192 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 IL4I1Q96RQ9 567 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 MAGEE1Q9HCI5 957 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 FZD4Q9ULV1 537 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 GRIP1Q9Y3R0 1128 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 PAPSS2O95340 614 aaPredicted RBP11.16□□□□□ -0.62
PTPRF-203ENST00000372407 ERVK-21P61565 698 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 SERINC3Q13530 473 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 FAM182AQ5T1J6 154 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 CDCA2Q69YH5 1023 aaPredicted RBP11.16□□□□□ -0.62
PTPRF-203ENST00000372407 LRRC70Q7Z2Q7 622 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 TTLQ8NG68 377 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 GEMIN6Q8WXD5 167 aaKnown RBP11.16□□□□□ -0.62
PTPRF-203ENST00000372407 C12orf66Q96MD2 445 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 RAB11FIP5Q9BXF6 653 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 POFUT2Q9Y2G5 429 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 ZNF487B1APH4 448 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 SLC31A1O15431 190 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 TGFB1P01137 390 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 EPOP01588 193 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 FBXO43Q4G163 708 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 EIPR1Q53HC9 387 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 SLC2A7Q6PXP3 512 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 OTOP2Q7RTS6 562 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 TAF8Q7Z7C8 310 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 PIM3Q86V86 326 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 C1orf52Q8N6N3 182 aaKnown RBP11.16□□□□□ -0.62
PTPRF-203ENST00000372407 CRELD1Q96HD1 420 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms