RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 ITGBL1O95965 494 aaPredicted RBP11.3□□□□□ -0.6
SYNE1-204ENST00000367248 ARSAP15289 507 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 PRPS1L1P21108 318 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 CHN2P52757 468 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 PSMD4P55036 377 aaKnown RBP11.3□□□□□ -0.6
SYNE1-204ENST00000367248 KRR1Q13601 381 aaKnown RBP11.3□□□□□ -0.6
SYNE1-204ENST00000367248 TMEM25Q86YD3 366 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 CAMKVQ8NCB2 501 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 RASSF5Q8WWW0 418 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 KIAA1191Q96A73 305 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 SLC35G5Q96KT7 338 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 EBF4Q9BQW3 602 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 TBL1XR1Q9BZK7 514 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 A0A1W2PRB8 838 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 FAM234BA2RU67 622 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 MID1O15344 667 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 MED26O95402 600 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 IFNGP01579 166 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 HEXBP07686 556 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 C8orf89P0DMQ9 161 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 DPYSQ14117 519 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 SIM2Q14190 667 aaPredicted RBP11.3□□□□□ -0.6
SYNE1-204ENST00000367248 ZNF730Q6ZMV8 503 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 DNAJB8Q8NHS0 232 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 CCNB1IP1Q9NPC3 277 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 ZDHHC7Q9NXF8 308 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 GSTK1Q9Y2Q3 226 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 TSPAN6O43657 245 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 HNF1BP35680 557 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 CLCN7P51798 805 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 SLC18A1P54219 525 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 JAZF1Q86VZ6 243 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 OR8H2Q8N162 312 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 CLPTM1LQ96KA5 538 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 TRNT1Q96Q11 434 aaKnown RBP11.3□□□□□ -0.6
SYNE1-204ENST00000367248 OLFM1Q99784 485 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 C6orf62Q9GZU0 229 aaPredicted RBP11.3□□□□□ -0.6
SYNE1-204ENST00000367248 CXorf56Q9H5V9 222 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 CDC40O60508 579 aaKnown RBP eCLIP11.3□□□□□ -0.6
SYNE1-204ENST00000367248 FABP3P05413 133 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 C11orf88Q6PI97 169 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 THOC6Q86W42 341 aaKnown RBP11.3□□□□□ -0.6
SYNE1-204ENST00000367248 HIPK1Q86Z02 1210 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 C1orf52Q8N6N3 182 aaKnown RBP11.3□□□□□ -0.6
SYNE1-204ENST00000367248 SH3BGRL2Q9UJC5 107 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 MRPS7Q9Y2R9 242 aaKnown RBP11.3□□□□□ -0.6
SYNE1-204ENST00000367248 GBAP04062 536 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 CEBPBP17676 345 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 NTSR1P30989 418 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 NCBP2P52298 156 aaKnown RBP eCLIP11.3□□□□□ -0.6
SYNE1-204ENST00000367248 TMEM115Q12893 351 aaPredicted RBP11.3□□□□□ -0.6
SYNE1-204ENST00000367248 TMEM198Q66K66 360 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 ABHD13Q7L211 337 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 GALNT7Q86SF2 657 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 SCD5Q86SK9 330 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 HEATR4Q86WZ0 1026 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 CHERPQ8IWX8 916 aaKnown RBP11.3□□□□□ -0.6
SYNE1-204ENST00000367248 PEX5LQ8IYB4 626 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 OR52J3Q8NH60 311 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 OR10A6Q8NH74 314 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 CMTM7Q96FZ5 175 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 OR1A2Q9Y585 309 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 SLC22A2O15244 555 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 WFS1O76024 890 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 NR2F6P10588 404 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 GDF5P43026 501 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 PDK3Q15120 406 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 PM20D1Q6GTS8 502 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 OR10Q1Q8NGQ4 319 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 TOP1MTQ969P6 601 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 DGKBQ9Y6T7 804 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 FAM221BA6H8Z2 402 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 EDN1P05305 212 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 XIAPP98170 497 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 RHAGQ02094 409 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 C2CD4AQ8NCU7 369 aaPredicted RBP11.29□□□□□ -0.6
SYNE1-204ENST00000367248 C3orf58Q8NDZ4 430 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 MMABQ96EY8 250 aaPredicted RBP11.29□□□□□ -0.6
SYNE1-204ENST00000367248 MRGPRX2Q96LB1 330 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 PNPLA3Q9NST1 481 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 ZNF282Q9UDV7 671 aaPredicted RBP11.29□□□□□ -0.6
SYNE1-204ENST00000367248 SUSD2Q9UGT4 822 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 FAM86C2PA6NEL3 165 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 CPSF4LA6NMK7 179 aaKnown RBP11.29□□□□□ -0.6
SYNE1-204ENST00000367248 TULP3O75386 442 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 MAOBP27338 520 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 CTSKP43235 329 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 CDKN1CP49918 316 aaPredicted RBP11.29□□□□□ -0.6
SYNE1-204ENST00000367248 RPS21P63220 83 aaKnown RBP11.29□□□□□ -0.6
SYNE1-204ENST00000367248 TNFAIP8L2Q6P589 184 aaPredicted RBP11.29□□□□□ -0.6
SYNE1-204ENST00000367248 PIK3C3Q8NEB9 887 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 TSPAN14Q8NG11 270 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 ZNF483Q8TF39 744 aaPredicted RBP11.29□□□□□ -0.6
SYNE1-204ENST00000367248 PDP1Q9P0J1 537 aaPredicted RBP11.29□□□□□ -0.6
SYNE1-204ENST00000367248 KDM3BQ7LBC6 1761 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 MAFKO60675 156 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 VSX2P58304 361 aaPredicted RBP11.29□□□□□ -0.6
SYNE1-204ENST00000367248 SLC18A2Q05940 514 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 SLC10A2Q12908 348 aaPredicted RBP11.29□□□□□ -0.6
SYNE1-204ENST00000367248 TRIM25Q14258 630 aaKnown RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms