RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 SMC6Q96SB8 1091 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 HBEGFQ99075 208 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 MRPL57Q9BQC6 102 aaKnown RBP3.89□□□□□ -1.79
LIG4-201ENST00000356922 GATA5Q9BWX5 397 aaPredicted RBP3.89□□□□□ -1.79
LIG4-201ENST00000356922 MRPL46Q9H2W6 279 aaKnown RBP3.89□□□□□ -1.79
LIG4-201ENST00000356922 TRIT1Q9H3H1 467 aaKnown RBP3.89□□□□□ -1.79
LIG4-201ENST00000356922 TAC3Q9UHF0 121 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 DCDC2Q9UHG0 476 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 EPG5Q9HCE0 2579 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 FEZF1A0PJY2 475 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 TMEM233B4DJY2 109 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 SUPT3HB4E1H0 165 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 E7EQ34 232 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 DFNA5O60443 496 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 DNAJB6O75190 326 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 SUPT3HO75486 399 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 LDOC1O95751 146 aaPredicted RBP3.88□□□□□ -1.79
LIG4-201ENST00000356922 C9P02748 559 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 RPLP0P05388 317 aaKnown RBP3.88□□□□□ -1.79
LIG4-201ENST00000356922 JUNP05412 331 aaKnown RBP3.88□□□□□ -1.79
LIG4-201ENST00000356922 COL6A2P12110 1019 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 HGFP14210 728 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 CPA3P15088 417 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 CKMT2P17540 419 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 SPINK2P20155 84 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 MAGP20916 626 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 SERPINB3P29508 390 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 ATP5DP30049 168 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 PKLRP30613 574 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 RAB28P51157 221 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 PNLIPRP1P54315 467 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 ATP6V0D1P61421 351 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 TBPL1P62380 186 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 DAB2P98082 770 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 SF3A3Q12874 501 aaKnown RBP eCLIP3.88□□□□□ -1.79
LIG4-201ENST00000356922 NR1D2Q14995 579 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 PLCL1Q15111 1095 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 RSPO4Q2I0M5 234 aaPredicted RBP3.88□□□□□ -1.79
LIG4-201ENST00000356922 TAF1BQ53T94 588 aaPredicted RBP3.88□□□□□ -1.79
LIG4-201ENST00000356922 FBXO42Q6P3S6 717 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 UNC5DQ6UXZ4 953 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 DCUN1D3Q8IWE4 304 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 SYTL1Q8IYJ3 562 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 PDPRQ8NCN5 879 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 OR56A3Q8NH54 315 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 MCOLN3Q8TDD5 553 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 RAD51AP1Q96B01 352 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 CCDC138Q96M89 665 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 TGM7Q96PF1 710 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 SLC38A3Q99624 504 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 AICDAQ9GZX7 198 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 ACBD3Q9H3P7 528 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 SRMSQ9H3Y6 488 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 STN1Q9H668 368 aaKnown RBP3.88□□□□□ -1.79
LIG4-201ENST00000356922 SLC6A20Q9NP91 592 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 SLCO1B3Q9NPD5 702 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 SEMA4BQ9NPR2 832 aaPredicted RBP3.88□□□□□ -1.79
LIG4-201ENST00000356922 POT1Q9NUX5 634 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 OXSMQ9NWU1 459 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 SCN3AQ9NY46 2000 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 DLL3Q9NYJ7 618 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 NCKIPSDQ9NZQ3 722 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 CD274Q9NZQ7 290 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 PTGDR2Q9Y5Y4 395 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 ACACBO00763 2458 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 LOC105369274A0A096LPK9 316 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 LOC102723532A0A0G2JNH3 316 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 OR5K3A6NET4 321 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 RHPN2P1A8MT19 583 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 NTN3O00634 580 aaPredicted RBP3.88□□□□□ -1.79
LIG4-201ENST00000356922 FLRT2O43155 660 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 PRPF4O43172 522 aaKnown RBP eCLIP3.88□□□□□ -1.797e-12■■■■□ 20.2
LIG4-201ENST00000356922 MED26O95402 600 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 B3GALT4O96024 378 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 C8GP07360 202 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 CHN1P15882 459 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 UGT2B7P16662 529 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 BGNP21810 368 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 ACP1P24666 158 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 EEF1DP29692 281 aaKnown RBP3.88□□□□□ -1.79
LIG4-201ENST00000356922 GGT5P36269 586 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 SERPINB4P48594 390 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 SEPHS1P49903 392 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 FOXL2P58012 376 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 INSM1Q01101 510 aaPredicted RBP3.88□□□□□ -1.79
LIG4-201ENST00000356922 GUCY1A3Q02108 690 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 HSP90B2PQ58FF3 399 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 ZNF678Q5SXM1 525 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 AGBL2Q5U5Z8 902 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 FCRL6Q6DN72 434 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 FRMPD2BQ6IN97 320 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 SLC9B2Q86UD5 537 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 OR4N4Q8N0Y3 316 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 ANKRD53Q8N9V6 530 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 FBXO15Q8NCQ5 510 aaPredicted RBP3.88□□□□□ -1.79
LIG4-201ENST00000356922 EGFL8Q99944 293 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 PAIP2Q9BPZ3 127 aaKnown RBP3.88□□□□□ -1.79
LIG4-201ENST00000356922 DUSP23Q9BVJ7 150 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 SGPP1Q9BX95 441 aa3.88□□□□□ -1.79
LIG4-201ENST00000356922 CD244Q9BZW8 370 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms