RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 IVDP26440 423 aa19.08■□□□□ 0.65
CCDC88B-202ENST00000356786 ATP6AP1Q15904 470 aa19.08■□□□□ 0.65
CCDC88B-202ENST00000356786 NANOGP8Q6NSW7 305 aa19.08■□□□□ 0.65
CCDC88B-202ENST00000356786 NAPRTQ6XQN6 538 aa19.08■□□□□ 0.65
CCDC88B-202ENST00000356786 C1orf216Q8TAB5 229 aa19.08■□□□□ 0.65
CCDC88B-202ENST00000356786 RERGQ96A58 199 aaPredicted RBP19.08■□□□□ 0.65
CCDC88B-202ENST00000356786 LGALS12Q96DT0 336 aa19.08■□□□□ 0.65
CCDC88B-202ENST00000356786 RNF31Q96EP0 1072 aa19.08■□□□□ 0.65
CCDC88B-202ENST00000356786 BEX2Q9BXY8 128 aa19.08■□□□□ 0.65
CCDC88B-202ENST00000356786 NANOGQ9H9S0 305 aa19.08■□□□□ 0.65
CCDC88B-202ENST00000356786 FUOMA2VDF0 154 aa19.08■□□□□ 0.65
CCDC88B-202ENST00000356786 AKAP8O43823 692 aaKnown RBP19.08■□□□□ 0.65
CCDC88B-202ENST00000356786 TMEM44Q2T9K0 475 aa19.08■□□□□ 0.65
CCDC88B-202ENST00000356786 BTBD16Q32M84 506 aa19.08■□□□□ 0.65
CCDC88B-202ENST00000356786 CLEC12AQ5QGZ9 265 aa19.08■□□□□ 0.65
CCDC88B-202ENST00000356786 PARGQ86W56 976 aa19.08■□□□□ 0.65
CCDC88B-202ENST00000356786 CADM2Q8N3J6 435 aa19.08■□□□□ 0.65
CCDC88B-202ENST00000356786 CNIH3Q8TBE1 160 aa19.08■□□□□ 0.65
CCDC88B-202ENST00000356786 MOCOSQ96EN8 888 aa19.08■□□□□ 0.65
CCDC88B-202ENST00000356786 A0A1B0GVM2 712 aa19.08■□□□□ 0.64
CCDC88B-202ENST00000356786 STBD1O95210 358 aa19.08■□□□□ 0.64
CCDC88B-202ENST00000356786 C8GP07360 202 aa19.08■□□□□ 0.64
CCDC88B-202ENST00000356786 ITPKBP27987 946 aa19.08■□□□□ 0.64
CCDC88B-202ENST00000356786 NSG1P42857 185 aa19.08■□□□□ 0.64
CCDC88B-202ENST00000356786 CTC1Q2NKJ3 1217 aa19.08■□□□□ 0.64
CCDC88B-202ENST00000356786 GALNT6Q8NCL4 622 aa19.08■□□□□ 0.64
CCDC88B-202ENST00000356786 PEBP4Q96S96 227 aa19.08■□□□□ 0.64
CCDC88B-202ENST00000356786 CORO1BQ9BR76 489 aa19.08■□□□□ 0.64
CCDC88B-202ENST00000356786 ZNF717Q9BY31 904 aaPredicted RBP19.08■□□□□ 0.64
CCDC88B-202ENST00000356786 DPAGT1Q9H3H5 408 aa19.08■□□□□ 0.64
CCDC88B-202ENST00000356786 THG1LQ9NWX6 298 aaKnown RBP19.08■□□□□ 0.64
CCDC88B-202ENST00000356786 A0A1W2PRB8 838 aa19.08■□□□□ 0.64
CCDC88B-202ENST00000356786 OAS1P00973 400 aaKnown RBP19.08■□□□□ 0.64
CCDC88B-202ENST00000356786 CES5AQ6NT32 575 aa19.08■□□□□ 0.64
CCDC88B-202ENST00000356786 KLHL36Q8N4N3 616 aa19.08■□□□□ 0.64
CCDC88B-202ENST00000356786 DDX51Q8N8A6 666 aaKnown RBP eCLIP19.08■□□□□ 0.64
CCDC88B-202ENST00000356786 BRINP2Q9C0B6 783 aa19.08■□□□□ 0.64
CCDC88B-202ENST00000356786 UPB1Q9UBR1 384 aa19.08■□□□□ 0.64
CCDC88B-202ENST00000356786 FKBP7Q9Y680 259 aa19.08■□□□□ 0.64
CCDC88B-202ENST00000356786 RASAL1O95294 804 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 SLC9A3P48764 834 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 CEBPGP53567 150 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 NFATC3Q12968 1075 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 FIBCD1Q8N539 461 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 FBXO27Q8NI29 283 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 C14orf119Q9NWQ9 140 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 PAQR5Q9NXK6 330 aaPredicted RBP19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 CD84Q9UIB8 345 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 ZFP37Q9Y6Q3 630 aaPredicted RBP19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 CHRNA1P02708 482 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 SCNN1AP37088 669 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 MAP2K4P45985 399 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 SLC13A2Q13183 592 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 JAZF1Q86VZ6 243 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 SMG7Q92540 1137 aaKnown RBP19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 MGME1Q9BQP7 344 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 TRIM2Q9C040 744 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 TCF7L1Q9HCS4 588 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 NECTIN3Q9NQS3 549 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 SLC9A3R1O14745 358 aaPredicted RBP19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 PCDH7O60245 1069 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 STOMP27105 288 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 SPATS1Q496A3 300 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 ULK3Q6PHR2 472 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 CFAP206Q8IYR0 622 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 ZNF615Q8N8J6 731 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 OR4F6Q8NGB9 312 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 ITPKCQ96DU7 683 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 KLRG1Q96E93 195 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 BORCS6Q96GS4 357 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 HSH2DQ96JZ2 352 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 VPS29Q9UBQ0 182 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 DPP7Q9UHL4 492 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 ANXA2P2A6NMY6 339 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 H0YJX3 145 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 DLGAP1O14490 977 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 ANXA2P07355 339 aaKnown RBP19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 SF1Q15637 639 aaKnown RBP19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 USP41Q3LFD5 358 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 ATP13A5Q4VNC0 1218 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 SCAMP5Q8TAC9 235 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 HAPLN3Q96S86 360 aa19.07■□□□□ 0.64
CCDC88B-202ENST00000356786 C1QTNF3-AMACRE9PGA6 284 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 DCLK1O15075 740 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 IRAK2O43187 625 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 AP1S1P61966 158 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 ADAM15Q13444 863 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 DUSP28Q4G0W2 176 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 NRG4Q8WWG1 115 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 GEMIN6Q8WXD5 167 aaKnown RBP19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 TMIGD2Q96BF3 282 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 PRICKLE1Q96MT3 831 aaPredicted RBP19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 FUZQ9BT04 418 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 FCF1Q9Y324 198 aaKnown RBP19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 TTC24A2A3L6 582 aaPredicted RBP19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 C9IYK1 514 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 L7N2F9 121 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 XYLBO75191 536 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 DNAJB5O75953 348 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 PAPSS2O95340 614 aaPredicted RBP19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 101.9 ms