RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 USP45Q70EL2 814 aa6.82□□□□□ -1.32
VPS13A-201ENST00000355766 GLT6D1Q7Z4J2 308 aa6.82□□□□□ -1.32
VPS13A-201ENST00000355766 YTHDF3Q7Z739 585 aaKnown RBP6.82□□□□□ -1.32
VPS13A-201ENST00000355766 SDCCAG8Q86SQ7 713 aaPredicted RBP6.82□□□□□ -1.32
VPS13A-201ENST00000355766 TBC1D3Q8IZP1 549 aaPredicted RBP6.82□□□□□ -1.32
VPS13A-201ENST00000355766 C4orf33Q8N1A6 199 aa6.82□□□□□ -1.32
VPS13A-201ENST00000355766 TMEM145Q8NBT3 493 aa6.82□□□□□ -1.32
VPS13A-201ENST00000355766 BCAS4Q8TDM0 211 aa6.82□□□□□ -1.32
VPS13A-201ENST00000355766 TCP10LQ8TDR4 215 aa6.82□□□□□ -1.32
VPS13A-201ENST00000355766 LRRC8CQ8TDW0 803 aa6.82□□□□□ -1.32
VPS13A-201ENST00000355766 TBRG4Q969Z0 631 aaKnown RBP eCLIP6.82□□□□□ -1.32
VPS13A-201ENST00000355766 ARRDC3Q96B67 414 aa6.82□□□□□ -1.32
VPS13A-201ENST00000355766 C7orf26Q96N11 449 aa6.82□□□□□ -1.32
VPS13A-201ENST00000355766 TSNARE1Q96NA8 513 aa6.82□□□□□ -1.32
VPS13A-201ENST00000355766 CCT8L2Q96SF2 557 aa6.82□□□□□ -1.32
VPS13A-201ENST00000355766 TTC1Q99614 292 aa6.82□□□□□ -1.32
VPS13A-201ENST00000355766 KLHL25Q9H0H3 589 aa6.82□□□□□ -1.32
VPS13A-201ENST00000355766 FAM96AQ9H5X1 160 aa6.82□□□□□ -1.32
VPS13A-201ENST00000355766 SNX15Q9NRS6 342 aa6.82□□□□□ -1.32
VPS13A-201ENST00000355766 SMOXQ9NWM0 555 aa6.82□□□□□ -1.32
VPS13A-201ENST00000355766 GEMIN8Q9NWZ8 242 aaKnown RBP6.82□□□□□ -1.32
VPS13A-201ENST00000355766 SIRPGQ9P1W8 387 aa6.82□□□□□ -1.32
VPS13A-201ENST00000355766 FBLN5Q9UBX5 448 aa6.82□□□□□ -1.32
VPS13A-201ENST00000355766 APPL1Q9UKG1 709 aa6.82□□□□□ -1.32
VPS13A-201ENST00000355766 FBXO5Q9UKT4 447 aa6.82□□□□□ -1.32
VPS13A-201ENST00000355766 INTS6Q9UL03 887 aaKnown RBP6.82□□□□□ -1.32
VPS13A-201ENST00000355766 PHTF1Q9UMS5 762 aa6.82□□□□□ -1.32
VPS13A-201ENST00000355766 CA5BQ9Y2D0 317 aa6.82□□□□□ -1.32
VPS13A-201ENST00000355766 PCDHGA7Q9Y5G6 932 aa6.82□□□□□ -1.32
VPS13A-201ENST00000355766 PSAT1Q9Y617 370 aa6.82□□□□□ -1.32
VPS13A-201ENST00000355766 SPENQ96T58 3664 aaKnown RBP6.82□□□□□ -1.32
VPS13A-201ENST00000355766 A0A1W2PPM1 405 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 NEMP2A6NFY4 417 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 TTC34A8MYJ7 566 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 H3BMM5 538 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 K7ESM1 405 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 PSMD11O00231 422 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 SCAMP1O15126 338 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 NOBOXO60393 691 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 ZNF821O75541 412 aaPredicted RBP6.81□□□□□ -1.32
VPS13A-201ENST00000355766 LIPCP11150 499 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 STMN1P16949 149 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 TPH1P17752 444 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 DRD4P21917 467 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 ALDH3A1P30838 453 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 SLC5A2P31639 672 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 CASRP41180 1078 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 METAP1P53582 386 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 EPHB1P54762 984 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 DCDC1P59894 354 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 RAB10P61026 200 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 OLIG2Q13516 323 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 PDE1CQ14123 709 aaPredicted RBP6.81□□□□□ -1.32
VPS13A-201ENST00000355766 ELAVL3Q14576 367 aaKnown RBP6.81□□□□□ -1.32
VPS13A-201ENST00000355766 CLCA4Q14CN2 919 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 TGIF1Q15583 401 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 IGFBP7Q16270 282 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 CDKN3Q16667 212 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 ZSCAN26Q16670 478 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 MYLK3Q32MK0 819 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 GPR33Q49SQ1 333 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 GLIPR1L2Q4G1C9 344 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 CARD16Q5EG05 197 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 MROH9Q5TGP6 573 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 ATG16L1Q676U5 607 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 FAM45BPQ6NSW5 357 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 ESRP1Q6NXG1 681 aaKnown RBP6.81□□□□□ -1.32
VPS13A-201ENST00000355766 ZCCHC8Q6NZY4 707 aaKnown RBP6.81□□□□□ -1.32
VPS13A-201ENST00000355766 LVRNQ6Q4G3 990 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 EFL1Q7Z2Z2 1120 aaKnown RBP6.81□□□□□ -1.32
VPS13A-201ENST00000355766 APCDD1Q8J025 514 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 TTC30BQ8N4P2 665 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 GBP7Q8N8V2 638 aaPredicted RBP6.81□□□□□ -1.32
VPS13A-201ENST00000355766 LPCAT1Q8NF37 534 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 OR4L1Q8NH43 312 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 FAM45AQ8TCE6 357 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 BLOC1S5Q8TDH9 187 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 PIH1D2Q8WWB5 315 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 CCDC126Q96EE4 140 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 SCRN2Q96FV2 425 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 ZNF778Q96MU6 729 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 PLEKHG4BQ96PX9 1271 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 MYOCQ99972 504 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 SPATA25Q9BR10 227 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 ADNPQ9H2P0 1102 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 STN1Q9H668 368 aaKnown RBP6.81□□□□□ -1.32
VPS13A-201ENST00000355766 CAAP1Q9H8G2 361 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 IARS2Q9NSE4 1012 aaKnown RBP6.81□□□□□ -1.32
VPS13A-201ENST00000355766 CATSPERZQ9NTU4 200 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 PIH1D1Q9NWS0 290 aaKnown RBP6.81□□□□□ -1.32
VPS13A-201ENST00000355766 NCKIPSDQ9NZQ3 722 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 KLHL42Q9P2K6 505 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 TLK1Q9UKI8 766 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 PCDHB10Q9UN67 800 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 PKP3Q9Y446 797 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 ZNF711Q9Y462 761 aa6.81□□□□□ -1.32
VPS13A-201ENST00000355766 ZNF106Q9H2Y7 1883 aaKnown RBP6.81□□□□□ -1.32
VPS13A-201ENST00000355766 AHCTF1Q8WYP5 2266 aa6.8□□□□□ -1.32
VPS13A-201ENST00000355766 A0A096LPK6 155 aa6.8□□□□□ -1.32
VPS13A-201ENST00000355766 TRBV5-4A0A0C4DH59 114 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms