RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 DDX3XO00571 662 aaKnown RBP eCLIP10.76□□□□□ -0.696e-22■□□□□ 9.2
RTN3-204ENST00000354497 SOCS6O14544 535 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 HCRTR1O43613 425 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 F10P00742 488 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 RPSAP08865 295 aaKnown RBP10.76□□□□□ -0.69
RTN3-204ENST00000354497 GZMAP12544 262 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 MMP11P24347 488 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 CA7P43166 264 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 SCTRP47872 440 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 NEK2P51955 445 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 RBPJQ06330 500 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 CKAP4Q07065 602 aaKnown RBP10.76□□□□□ -0.69
RTN3-204ENST00000354497 Q0VFX4 171 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 PRKG2Q13237 762 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 MFAP5Q13361 173 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 ITGA9Q13797 1035 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 ARMC3Q5W041 872 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 ZDHHC20Q5W0Z9 365 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 RPUSD3Q6P087 351 aaKnown RBP10.76□□□□□ -0.69
RTN3-204ENST00000354497 EMBQ6PCB8 327 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 SPESP1Q6UW49 350 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 ZNF662Q6ZS27 426 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 GLT6D1Q7Z4J2 308 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 AMIGO1Q86WK6 493 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.76□□□□□ -0.693e-7■■■□□ 19.1
RTN3-204ENST00000354497 PHC3Q8NDX5 983 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 OR52E1Q8NGJ3 308 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 BLOC1S5Q8TDH9 187 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 CAVIN3Q969G5 261 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 TAAR6Q96RI8 345 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 ERGIC2Q96RQ1 377 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 CCT8L2Q96SF2 557 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 ZNF670Q9BS34 389 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 SLC25A51Q9H1U9 297 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 RABEP2Q9H5N1 569 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 SOX17Q9H6I2 414 aaPredicted RBP10.76□□□□□ -0.69
RTN3-204ENST00000354497 GALNT8Q9NY28 637 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 PLA2G3Q9NZ20 509 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 IFNKQ9P0W0 207 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 SEC14L3Q9UDX4 400 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 LIMA1Q9UHB6 759 aaKnown RBP10.76□□□□□ -0.69
RTN3-204ENST00000354497 NEU2Q9Y3R4 380 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 DNHD1Q96M86 4753 aa10.76□□□□□ -0.69
RTN3-204ENST00000354497 DYTNA2CJ06 578 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 KLHL18O94889 574 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 CD1EP15812 388 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 HMGCLP35914 325 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 ARSEP51690 589 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 SMSP52788 366 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 PPIDQ08752 370 aaKnown RBP10.75□□□□□ -0.69
RTN3-204ENST00000354497 KLHL30Q0D2K2 578 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 FAAH2Q6GMR7 532 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 XKRXQ6PP77 449 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 CPNE8Q86YQ8 564 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 MAP7D3Q8IWC1 876 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 MMP21Q8N119 569 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 PQLC3Q8N755 202 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 NIPA2Q8N8Q9 360 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.75□□□□□ -0.69
RTN3-204ENST00000354497 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.75□□□□□ -0.69
RTN3-204ENST00000354497 MTFMTQ96DP5 389 aaKnown RBP10.75□□□□□ -0.69
RTN3-204ENST00000354497 DCUN1D1Q96GG9 259 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 NAPGQ99747 312 aaPredicted RBP10.75□□□□□ -0.69
RTN3-204ENST00000354497 CCM2Q9BSQ5 444 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.75□□□□□ -0.693e-6■□□□□ 8.9
RTN3-204ENST00000354497 CENPHQ9H3R5 247 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 ZNF160Q9HCG1 818 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 TBCCD1Q9NVR7 557 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 PKP3Q9Y446 797 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 HS3ST3B1Q9Y662 390 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 BZW2Q9Y6E2 419 aaKnown RBP10.75□□□□□ -0.69
RTN3-204ENST00000354497 A0A1B0GTL3 188 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 ZNF189O75820 626 aaPredicted RBP10.75□□□□□ -0.69
RTN3-204ENST00000354497 UGT2B7P16662 529 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 ART1P52961 327 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 ADORA2A-AS1P86434 159 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 FANCCQ00597 558 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 PTPRCAPQ14761 206 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 PDK2Q15119 407 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 ZIC1Q15915 447 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 RNF187Q5TA31 235 aaPredicted RBP10.75□□□□□ -0.69
RTN3-204ENST00000354497 ZNF324BQ6AW86 544 aaPredicted RBP10.75□□□□□ -0.69
RTN3-204ENST00000354497 KIRREL2Q6UWL6 708 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 TTLL10Q6ZVT0 673 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 ZNF572Q7Z3I7 529 aaPredicted RBP10.75□□□□□ -0.69
RTN3-204ENST00000354497 MREGQ8N565 214 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 METTL27Q8N6F8 245 aaPredicted RBP10.75□□□□□ -0.69
RTN3-204ENST00000354497 CCDC110Q8TBZ0 833 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 HM13Q8TCT9 377 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 ZNF398Q8TD17 642 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.75□□□□□ -0.69
RTN3-204ENST00000354497 TRPC4APQ8TEL6 797 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 CCT6BQ92526 530 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 VPS50Q96JG6 964 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 CGREF1Q99674 301 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 THAP2Q9H0W7 228 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 GLOD4Q9HC38 313 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 SLC22A11Q9NSA0 550 aa10.75□□□□□ -0.69
RTN3-204ENST00000354497 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.75□□□□□ -0.696e-7■■■■□ 22.1
RTN3-204ENST00000354497 PTGFRNQ9P2B2 879 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms