RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 GALNT13Q8IUC8 556 aa18.81■□□□□ 0.6
COL9A3-201ENST00000343916 ZDHHC13Q8IUH4 622 aa18.81■□□□□ 0.6
COL9A3-201ENST00000343916 ASZ1Q8WWH4 475 aa18.81■□□□□ 0.6
COL9A3-201ENST00000343916 ABTB1Q969K4 478 aaPredicted RBP18.81■□□□□ 0.6
COL9A3-201ENST00000343916 FAM120BQ96EK7 910 aaKnown RBP18.81■□□□□ 0.6
COL9A3-201ENST00000343916 MTERF1Q99551 399 aaKnown RBP18.81■□□□□ 0.6
COL9A3-201ENST00000343916 CPPED1Q9BRF8 314 aaPredicted RBP18.81■□□□□ 0.6
COL9A3-201ENST00000343916 KCNH6Q9H252 994 aa18.81■□□□□ 0.6
COL9A3-201ENST00000343916 DNAAF2Q9NVR5 837 aaKnown RBP18.81■□□□□ 0.6
COL9A3-201ENST00000343916 CFAP99D6REC4 459 aa18.8■□□□□ 0.6
COL9A3-201ENST00000343916 TSPAN6O43657 245 aa18.8■□□□□ 0.6
COL9A3-201ENST00000343916 SH3BGRLO75368 114 aa18.8■□□□□ 0.6
COL9A3-201ENST00000343916 CREG1O75629 220 aa18.8■□□□□ 0.6
COL9A3-201ENST00000343916 CYP2A6P11509 494 aaPredicted RBP18.8■□□□□ 0.6
COL9A3-201ENST00000343916 TIMP2P16035 220 aa18.8■□□□□ 0.6
COL9A3-201ENST00000343916 CDK9P50750 372 aaKnown RBP18.8■□□□□ 0.6
COL9A3-201ENST00000343916 TMED1Q13445 227 aa18.8■□□□□ 0.6
COL9A3-201ENST00000343916 DCTN2Q13561 401 aaKnown RBP18.8■□□□□ 0.6
COL9A3-201ENST00000343916 ZNF697Q5TEC3 545 aa18.8■□□□□ 0.6
COL9A3-201ENST00000343916 GPR141Q7Z602 305 aa18.8■□□□□ 0.6
COL9A3-201ENST00000343916 ING5Q8WYH8 240 aa18.8■□□□□ 0.6
COL9A3-201ENST00000343916 CMTM7Q96FZ5 175 aa18.8■□□□□ 0.6
COL9A3-201ENST00000343916 MRGPRX3Q96LB0 322 aa18.8■□□□□ 0.6
COL9A3-201ENST00000343916 ITM2BQ9Y287 266 aa18.8■□□□□ 0.6
COL9A3-201ENST00000343916 CARNS1A5YM72 827 aa18.8■□□□□ 0.6
COL9A3-201ENST00000343916 TRIM64CA6NLI5 447 aa18.8■□□□□ 0.6
COL9A3-201ENST00000343916 ARHGEF33A8MVX0 844 aa18.8■□□□□ 0.6
COL9A3-201ENST00000343916 GNGT2O14610 69 aa18.8■□□□□ 0.6
COL9A3-201ENST00000343916 ERN1O75460 977 aaKnown RBP18.8■□□□□ 0.6
COL9A3-201ENST00000343916 SERPINA1P01009 418 aa18.8■□□□□ 0.6
COL9A3-201ENST00000343916 PRPS2P11908 318 aa18.8■□□□□ 0.6
COL9A3-201ENST00000343916 SP140Q13342 867 aa18.8■□□□□ 0.6
COL9A3-201ENST00000343916 LRIF1Q5T3J3 769 aa18.8■□□□□ 0.6
COL9A3-201ENST00000343916 HENMT1Q5T8I9 393 aaKnown RBP18.8■□□□□ 0.6
COL9A3-201ENST00000343916 ADNP2Q6IQ32 1131 aa18.8■□□□□ 0.6
COL9A3-201ENST00000343916 ZNF551Q7Z340 670 aaPredicted RBP18.8■□□□□ 0.6
COL9A3-201ENST00000343916 CLVS1Q8IUQ0 354 aaPredicted RBP18.8■□□□□ 0.6
COL9A3-201ENST00000343916 TUBA8Q9NY65 449 aaPredicted RBP18.8■□□□□ 0.6
COL9A3-201ENST00000343916 EBF1Q9UH73 591 aa18.8■□□□□ 0.6
COL9A3-201ENST00000343916 U3KQV3 271 aa18.8■□□□□ 0.6
COL9A3-201ENST00000343916 A0A096LPI6 279 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 A0A1W2PQ67 120 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 E7EQ34 232 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 MAGEB3O15480 346 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 ARHGEF15O94989 841 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 THRBP10828 461 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 SHMT2P34897 504 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 GZMMP51124 257 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 AP1S2P56377 157 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 IRF8Q02556 426 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 GRIN2CQ14957 1233 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 NOXRED1Q6NXP6 359 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 TTC23LQ6PF05 361 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 GPR180Q86V85 440 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 PLPP6Q8IY26 295 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 TMEM132CQ8N3T6 1108 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 OR7A2PQ8NGA2 310 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 CDC26Q8NHZ8 85 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 MED8Q96G25 268 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 ITCHQ96J02 903 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 NPLQ9BXD5 320 aaPredicted RBP18.79■□□□□ 0.6
COL9A3-201ENST00000343916 DCAF13Q9NV06 445 aaKnown RBP18.79■□□□□ 0.6
COL9A3-201ENST00000343916 CDC14AQ9UNH5 594 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 C16orf96A6NNT2 1141 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 RFXANKO14593 260 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 EFCAB14O75071 495 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 SCELO95171 688 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 PTPN2P17706 415 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 PFKLP17858 780 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 PRKACGP22612 351 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 PMS2P3Q13401 168 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 ZNF77Q15935 545 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 XKR6Q5GH73 641 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 ATG9BQ674R7 924 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 DOK6Q6PKX4 331 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 SPESP1Q6UW49 350 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 GPR149Q86SP6 731 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 TOR3AQ9H497 397 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 RMND5AQ9H871 391 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 CXXC1Q9P0U4 656 aaPredicted RBP18.79■□□□□ 0.6
COL9A3-201ENST00000343916 DNAJB9Q9UBS3 223 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 MAN2B2Q9Y2E5 1009 aa18.79■□□□□ 0.6
COL9A3-201ENST00000343916 SLCO2B1O94956 709 aa18.78■□□□□ 0.6
COL9A3-201ENST00000343916 JUPP14923 745 aa18.78■□□□□ 0.6
COL9A3-201ENST00000343916 HOXB9P17482 250 aaPredicted RBP18.78■□□□□ 0.6
COL9A3-201ENST00000343916 SYN1P17600 705 aa18.78■□□□□ 0.6
COL9A3-201ENST00000343916 EFNA1P20827 205 aaPredicted RBP18.78■□□□□ 0.6
COL9A3-201ENST00000343916 NRIP1P48552 1158 aa18.78■□□□□ 0.6
COL9A3-201ENST00000343916 TMEM179BQ7Z7N9 219 aa18.78■□□□□ 0.6
COL9A3-201ENST00000343916 CALHM3Q86XJ0 350 aa18.78■□□□□ 0.6
COL9A3-201ENST00000343916 RAVER1Q8IY67 606 aaKnown RBP18.78■□□□□ 0.6
COL9A3-201ENST00000343916 ALDH16A1Q8IZ83 802 aa18.78■□□□□ 0.6
COL9A3-201ENST00000343916 MRPL43Q8N983 215 aaKnown RBP18.78■□□□□ 0.6
COL9A3-201ENST00000343916 RASGEF1AQ8N9B8 481 aa18.78■□□□□ 0.6
COL9A3-201ENST00000343916 DDHD1Q8NEL9 900 aa18.78■□□□□ 0.6
COL9A3-201ENST00000343916 TESCQ96BS2 214 aa18.78■□□□□ 0.6
COL9A3-201ENST00000343916 FAM220BPB1ANY3 271 aa18.78■□□□□ 0.6
COL9A3-201ENST00000343916 H0YAE9 185 aa18.78■□□□□ 0.6
COL9A3-201ENST00000343916 SLC16A5O15375 505 aa18.78■□□□□ 0.6
COL9A3-201ENST00000343916 XPAP23025 273 aaPredicted RBP18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms