RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 HNF4AP41235 474 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 DMPKQ09013 629 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 DDX39BQ13838 428 aaKnown RBP12.97□□□□□ -0.33
HMGB1-202ENST00000339872 CEACAM7Q14002 265 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 PTGR1Q14914 329 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 ZNF423Q2M1K9 1284 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 TIGD2Q4W5G0 525 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 CACHD1Q5VU97 1274 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 DUS1LQ6P1R4 473 aaKnown RBP12.97□□□□□ -0.33
HMGB1-202ENST00000339872 HACD2Q6Y1H2 254 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 TRIM69Q86WT6 500 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 LIX1Q8N485 282 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 RNF175Q8N4F7 328 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 OR5K2Q8NHB8 316 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 CDX2Q99626 313 aaPredicted RBP12.97□□□□□ -0.33
HMGB1-202ENST00000339872 SGPP1Q9BX95 441 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 ACTL8Q9H568 366 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 PRM3Q9NNZ6 103 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 POLMQ9NP87 494 aaPredicted RBP12.97□□□□□ -0.33
HMGB1-202ENST00000339872 SLC52A3Q9NQ40 469 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 CCDC177Q9NQR7 707 aaPredicted RBP12.97□□□□□ -0.33
HMGB1-202ENST00000339872 GPRC5BQ9NZH0 403 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 ACSL5Q9ULC5 683 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 DYRK1BQ9Y463 629 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 PLEKHM1Q9Y4G2 1056 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 A0A1W2PP18 115 aa12.96□□□□□ -0.33
HMGB1-202ENST00000339872 H0Y8X5 98 aa12.96□□□□□ -0.33
HMGB1-202ENST00000339872 MAN2B1O00754 1011 aa12.96□□□□□ -0.33
HMGB1-202ENST00000339872 FPGTO14772 594 aa12.96□□□□□ -0.33
HMGB1-202ENST00000339872 SCAMP1O15126 338 aa12.96□□□□□ -0.33
HMGB1-202ENST00000339872 RSL1D1O76021 490 aaKnown RBP12.96□□□□□ -0.33
HMGB1-202ENST00000339872 RGS19P49795 217 aa12.96□□□□□ -0.33
HMGB1-202ENST00000339872 PYCR3Q53H96 274 aa12.96□□□□□ -0.33
HMGB1-202ENST00000339872 THEMIS2Q5TEJ8 643 aa12.96□□□□□ -0.33
HMGB1-202ENST00000339872 ZNF852Q6ZMS4 543 aa12.96□□□□□ -0.33
HMGB1-202ENST00000339872 LRRC56Q8IYG6 542 aaPredicted RBP12.96□□□□□ -0.33
HMGB1-202ENST00000339872 C2orf73Q8N5S3 287 aaPredicted RBP12.96□□□□□ -0.33
HMGB1-202ENST00000339872 ENDOVQ8N8Q3 282 aaKnown RBP12.96□□□□□ -0.33
HMGB1-202ENST00000339872 DENND6BQ8NEG7 585 aa12.96□□□□□ -0.33
HMGB1-202ENST00000339872 TSPEARQ8WU66 669 aa12.96□□□□□ -0.33
HMGB1-202ENST00000339872 SGK2Q9HBY8 427 aa12.96□□□□□ -0.33
HMGB1-202ENST00000339872 FGF22Q9HCT0 170 aa12.96□□□□□ -0.33
HMGB1-202ENST00000339872 SPAG4Q9NPE6 437 aa12.96□□□□□ -0.33
HMGB1-202ENST00000339872 MAP10Q9P2G4 905 aa12.96□□□□□ -0.33
HMGB1-202ENST00000339872 SH2B3Q9UQQ2 575 aa12.96□□□□□ -0.33
HMGB1-202ENST00000339872 WDR37Q9Y2I8 494 aa12.96□□□□□ -0.33
HMGB1-202ENST00000339872 ASPDHA6ND91 283 aa12.96□□□□□ -0.34
HMGB1-202ENST00000339872 ANKRD28O15084 1053 aa12.96□□□□□ -0.34
HMGB1-202ENST00000339872 IL9P15248 144 aa12.96□□□□□ -0.34
HMGB1-202ENST00000339872 FOSL2P15408 326 aa12.96□□□□□ -0.34
HMGB1-202ENST00000339872 NPPBP16860 134 aa12.96□□□□□ -0.34
HMGB1-202ENST00000339872 MSX2P35548 267 aaPredicted RBP12.96□□□□□ -0.34
HMGB1-202ENST00000339872 COQ5Q5HYK3 327 aa12.96□□□□□ -0.34
HMGB1-202ENST00000339872 HIPK4Q8NE63 616 aa12.96□□□□□ -0.34
HMGB1-202ENST00000339872 WDR20Q8TBZ3 569 aa12.96□□□□□ -0.34
HMGB1-202ENST00000339872 C12orf66Q96MD2 445 aa12.96□□□□□ -0.34
HMGB1-202ENST00000339872 MTERF1Q99551 399 aaKnown RBP12.96□□□□□ -0.34
HMGB1-202ENST00000339872 TRIT1Q9H3H1 467 aaKnown RBP12.96□□□□□ -0.34
HMGB1-202ENST00000339872 TMEM45AQ9NWC5 275 aa12.96□□□□□ -0.34
HMGB1-202ENST00000339872 EBF1Q9UH73 591 aa12.96□□□□□ -0.34
HMGB1-202ENST00000339872 DUSP12Q9UNI6 340 aa12.96□□□□□ -0.34
HMGB1-202ENST00000339872 PRSS38A1L453 326 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 H0YIV9 168 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 EEDO75530 441 aaKnown RBP12.95□□□□□ -0.34
HMGB1-202ENST00000339872 SEMA4FO95754 770 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 CHRNB1P11230 501 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 XRCC1P18887 633 aaPredicted RBP12.95□□□□□ -0.34
HMGB1-202ENST00000339872 TCN1P20061 433 aaPredicted RBP12.95□□□□□ -0.34
HMGB1-202ENST00000339872 HNRNPA2B1P22626 353 aaKnown RBP12.95□□□□□ -0.34
HMGB1-202ENST00000339872 ME2P23368 584 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 JAK1P23458 1154 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 CASP2P42575 452 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 KIAA1024LP59773 190 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 PCDH1Q08174 1060 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 CSTF3Q12996 717 aaKnown RBP12.95□□□□□ -0.34
HMGB1-202ENST00000339872 CCNIQ14094 377 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 KIAA0040Q15053 153 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 LEXMQ3ZCV2 418 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 CATSPEREQ5SY80 951 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 ANO7Q6IWH7 933 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 C8orf82Q6P1X6 216 aaPredicted RBP12.95□□□□□ -0.34
HMGB1-202ENST00000339872 SLCO4C1Q6ZQN7 724 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 FAM156AQ8NDB6 213 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 NRTNQ99748 197 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 CARS2Q9HA77 564 aaKnown RBP12.95□□□□□ -0.34
HMGB1-202ENST00000339872 ASIC5Q9NY37 505 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 USP36Q9P275 1121 aaKnown RBP12.95□□□□□ -0.34
HMGB1-202ENST00000339872 TRIM38O00635 465 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 PCNAP12004 261 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 PRPH2P23942 346 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 DGKEP52429 567 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 SLC7A2P52569 658 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 NFYCQ13952 458 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 CAPRIN1Q14444 709 aaKnown RBP12.95□□□□□ -0.34
HMGB1-202ENST00000339872 USP39Q53GS9 565 aaKnown RBP12.95□□□□□ -0.34
HMGB1-202ENST00000339872 PAGE3Q5JUK9 113 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 PRAMEF14Q5SWL7 426 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 PRAMEF13Q5VWM6 474 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 CAPRIN2Q6IMN6 1127 aaKnown RBP12.95□□□□□ -0.34
HMGB1-202ENST00000339872 ADNP2Q6IQ32 1131 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms