RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 MAN2B2Q9Y2E5 1009 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 HMGCS1Q01581 520 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 ENPP2Q13822 863 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 FAM110CQ1W6H9 321 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 CARD16Q5EG05 197 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 SNX27Q96L92 541 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 ACBD6Q9BR61 282 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 C1orf109Q9NX04 203 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 TMEM98Q9Y2Y6 226 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 ZC3H13Q5T200 1668 aaKnown RBP12.36□□□□□ -0.43
SDC3-201ENST00000336798 A0A0G2JPF8 293 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 FAM237AA0A1B0GTK4 181 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 MYOCOSA0A1B0GUC4 107 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 HNRNPCL3B7ZW38 293 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 E2F3O00716 465 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 CD2P06729 351 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 HNRNPCL4P0DMR1 293 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 SRCP12931 536 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 PEX2P28328 305 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 UQCRC1P31930 480 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 LIMK2P53671 638 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 GDF10P55107 478 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 SLC3A1Q07837 685 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 OCLNQ16625 522 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 CCL14Q16627 93 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 SLC29A4Q7RTT9 530 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 FSTL5Q8N475 847 aaPredicted RBP12.35□□□□□ -0.43
SDC3-201ENST00000336798 TFAP2BQ92481 460 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 TUBGCP5Q96RT8 1024 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 AIFM2Q9BRQ8 373 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 SMG9Q9H0W8 520 aaKnown RBP12.35□□□□□ -0.43
SDC3-201ENST00000336798 BRF2Q9HAW0 419 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 C2orf92A0A1B0GVN3 265 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 C9J4A7 227 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 ERI3O43414 337 aaKnown RBP12.35□□□□□ -0.43
SDC3-201ENST00000336798 MPIP34949 423 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 DCDC1P59894 354 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 DEFA5Q01523 94 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 GRM2Q14416 872 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 GPALPP1Q8IXQ4 340 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 YIPF7Q8N8F6 280 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 OR4E2Q8NGC2 313 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 OR10Q1Q8NGQ4 319 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 NCSTNQ92542 709 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 TAMM41Q96BW9 452 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 ZBED6CLQ96FA7 236 aaPredicted RBP12.35□□□□□ -0.43
SDC3-201ENST00000336798 IL4I1Q96RQ9 567 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 BARD1Q99728 777 aaKnown RBP12.35□□□□□ -0.43
SDC3-201ENST00000336798 SLC35A5Q9BS91 424 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 SPIN1Q9Y657 262 aaPredicted RBP12.35□□□□□ -0.43
SDC3-201ENST00000336798 YJEFN3A6XGL0 299 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 WASHC1A8K0Z3 465 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 WASH3PC4AMC7 463 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 NIPSNAP2O75323 286 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 TNFP01375 233 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 CYP17A1P05093 508 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 CCR8P51685 355 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 TPTEP56180 551 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 XIAPP98170 497 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 ECT2LQ008S8 904 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 MPP2Q14168 576 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 EIPR1Q53HC9 387 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 WASH2PQ6VEQ5 465 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 PGAM4Q8N0Y7 254 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 NSMCE3Q96MG7 304 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 RBCK1Q9BYM8 510 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 SERINC1Q9NRX5 453 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 PIK3C2BO00750 1634 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 VNN2O95498 520 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 ASLP04424 464 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 JUNP05412 331 aaKnown RBP12.35□□□□□ -0.43
SDC3-201ENST00000336798 TYRP1P17643 537 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 BLKP51451 505 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 MECP2P51608 486 aaKnown RBP12.35□□□□□ -0.43
SDC3-201ENST00000336798 TMEM164Q5U3C3 297 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 LRRC70Q7Z2Q7 622 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 GALNT11Q8NCW6 608 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 SLAIN1Q8ND83 568 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 KLHL6Q8WZ60 621 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 TAC3Q9UHF0 121 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 FARSAQ9Y285 508 aaKnown RBP12.35□□□□□ -0.43
SDC3-201ENST00000336798 PCDHA2Q9Y5H9 948 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 MAU2Q9Y6X3 613 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 TRIM64BA6NI03 449 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 TRMUO75648 421 aaKnown RBP12.35□□□□□ -0.43
SDC3-201ENST00000336798 BCHEP06276 602 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 ITGA5P08648 1049 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 NSG1P42857 185 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 SLC9A3P48764 834 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 CLCNKAP51800 687 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 ID2Q02363 134 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 LIN52Q52LA3 116 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 ARHGAP40Q5TG30 622 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 NOXRED1Q6NXP6 359 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 JAGN1Q8N5M9 183 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 VGLL2Q8N8G2 317 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 RASSF5Q8WWW0 418 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 IRGQQ8WZA9 623 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 COL21A1Q96P44 957 aa12.35□□□□□ -0.43
SDC3-201ENST00000336798 FARSBQ9NSD9 589 aaKnown RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms