RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 TCTN2Q96GX1 697 aa12.87□□□□□ -0.35
VPS28-201ENST00000292510 PDLIM5Q96HC4 596 aaKnown RBP12.87□□□□□ -0.35
VPS28-201ENST00000292510 FUT8Q9BYC5 575 aa12.87□□□□□ -0.35
VPS28-201ENST00000292510 DPH1Q9BZG8 443 aa12.87□□□□□ -0.35
VPS28-201ENST00000292510 PARVBQ9HBI1 364 aa12.87□□□□□ -0.35
VPS28-201ENST00000292510 SYTL2Q9HCH5 934 aa12.87□□□□□ -0.35
VPS28-201ENST00000292510 UTP6Q9NYH9 597 aaKnown RBP12.87□□□□□ -0.35
VPS28-201ENST00000292510 STOX2Q9P2F5 926 aaPredicted RBP12.87□□□□□ -0.35
VPS28-201ENST00000292510 TAC3Q9UHF0 121 aa12.87□□□□□ -0.35
VPS28-201ENST00000292510 PILRAQ9UKJ1 303 aa12.87□□□□□ -0.35
VPS28-201ENST00000292510 HMX2A2RU54 273 aa12.86□□□□□ -0.35
VPS28-201ENST00000292510 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.86□□□□□ -0.35
VPS28-201ENST00000292510 GUCA1CO95843 209 aa12.86□□□□□ -0.35
VPS28-201ENST00000292510 NTRK1P04629 796 aa12.86□□□□□ -0.35
VPS28-201ENST00000292510 RPA3P35244 121 aaPredicted RBP12.86□□□□□ -0.35
VPS28-201ENST00000292510 GRIA3P42263 894 aa12.86□□□□□ -0.35
VPS28-201ENST00000292510 GABRA4P48169 554 aa12.86□□□□□ -0.35
VPS28-201ENST00000292510 ARHGAP19Q14CB8 494 aa12.86□□□□□ -0.35
VPS28-201ENST00000292510 ZKSCAN8Q15776 578 aaPredicted RBP12.86□□□□□ -0.35
VPS28-201ENST00000292510 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.86□□□□□ -0.35
VPS28-201ENST00000292510 MROH9Q5TGP6 573 aa12.86□□□□□ -0.35
VPS28-201ENST00000292510 FCRL6Q6DN72 434 aa12.86□□□□□ -0.35
VPS28-201ENST00000292510 FIGLAQ6QHK4 219 aa12.86□□□□□ -0.35
VPS28-201ENST00000292510 SBSNQ6UWP8 590 aa12.86□□□□□ -0.35
VPS28-201ENST00000292510 CACNA2D3Q8IZS8 1091 aa12.86□□□□□ -0.35
VPS28-201ENST00000292510 NKD1Q969G9 470 aa12.86□□□□□ -0.35
VPS28-201ENST00000292510 TSPAN17Q96FV3 270 aa12.86□□□□□ -0.35
VPS28-201ENST00000292510 CCDC138Q96M89 665 aa12.86□□□□□ -0.35
VPS28-201ENST00000292510 ATG10Q9H0Y0 220 aa12.86□□□□□ -0.35
VPS28-201ENST00000292510 ANKZF1Q9H8Y5 726 aa12.86□□□□□ -0.35
VPS28-201ENST00000292510 FANCEQ9HB96 536 aa12.86□□□□□ -0.35
VPS28-201ENST00000292510 POPDC3Q9HBV1 291 aa12.86□□□□□ -0.35
VPS28-201ENST00000292510 SLC6A20Q9NP91 592 aa12.86□□□□□ -0.35
VPS28-201ENST00000292510 TMEM184BQ9Y519 407 aaPredicted RBP12.86□□□□□ -0.35
VPS28-201ENST00000292510 PTPRQQ9UMZ3 2332 aa12.86□□□□□ -0.35
VPS28-201ENST00000292510 ZNF839A8K0R7 811 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 MAP3K7O43318 606 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 SCRG1O75711 98 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 HIST1H2AGP0C0S8 130 aaPredicted RBP12.85□□□□□ -0.35
VPS28-201ENST00000292510 CCDC166P0CW27 439 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 STMN1P16949 149 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 HIST1H2ADP20671 130 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 HSD17B2P37059 387 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 RAB10P61026 200 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 TBPL1P62380 186 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 ILF2Q12905 390 aaKnown RBP12.85□□□□□ -0.35
VPS28-201ENST00000292510 TSNQ15631 228 aaKnown RBP12.85□□□□□ -0.35
VPS28-201ENST00000292510 PPP1R3AQ16821 1122 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 ZXDCQ2QGD7 858 aaPredicted RBP12.85□□□□□ -0.35
VPS28-201ENST00000292510 COL28A1Q2UY09 1125 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 THEMIS2Q5TEJ8 643 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 CYB5D1Q6P9G0 228 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 AGTRAPQ6RW13 159 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 TMEM126BQ8IUX1 230 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 DNAJC22Q8N4W6 341 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 GALNT6Q8NCL4 622 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 N4BP2L2Q92802 583 aaPredicted RBP12.85□□□□□ -0.35
VPS28-201ENST00000292510 ALKBH8Q96BT7 664 aaKnown RBP12.85□□□□□ -0.35
VPS28-201ENST00000292510 MED8Q96G25 268 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 HIST1H2AHQ96KK5 128 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 FCRL4Q96PJ5 515 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 PAFAH2Q99487 392 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 HIST1H2AJQ99878 128 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 H2AFJQ9BTM1 129 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 TXLNGYQ9BZA5 131 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 SPRTNQ9H040 489 aaPredicted RBP12.85□□□□□ -0.35
VPS28-201ENST00000292510 AKIRIN1Q9H9L7 192 aaPredicted RBP12.85□□□□□ -0.35
VPS28-201ENST00000292510 CPNE5Q9HCH3 593 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 MRPS30Q9NP92 439 aaKnown RBP12.85□□□□□ -0.35
VPS28-201ENST00000292510 ARL15Q9NXU5 204 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 CTNNAL1Q9UBT7 734 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.85□□□□□ -0.35
VPS28-201ENST00000292510 V9GYY5 206 aaPredicted RBP12.85□□□□□ -0.35
VPS28-201ENST00000292510 LOC400499M0QZD8 3231 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 SPTBP11277 2137 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 NBEAQ8NFP9 2946 aa12.85□□□□□ -0.35
VPS28-201ENST00000292510 ZFYVE26Q68DK2 2539 aa12.84□□□□□ -0.35
VPS28-201ENST00000292510 A0A087WUV0 522 aaPredicted RBP12.84□□□□□ -0.35
VPS28-201ENST00000292510 IGKV1-8A0A0C4DH67 115 aa12.84□□□□□ -0.35
VPS28-201ENST00000292510 LOC101059948A0A1B0GTJ6 334 aa12.84□□□□□ -0.35
VPS28-201ENST00000292510 POC1B-GALNT4F8VUJ3 575 aa12.84□□□□□ -0.35
VPS28-201ENST00000292510 EFSO43281 561 aa12.84□□□□□ -0.35
VPS28-201ENST00000292510 RIPK2O43353 540 aa12.84□□□□□ -0.35
VPS28-201ENST00000292510 CTSVO60911 334 aa12.84□□□□□ -0.35
VPS28-201ENST00000292510 FKBP9O95302 570 aa12.84□□□□□ -0.35
VPS28-201ENST00000292510 SLC35E2BP0CK96 405 aa12.84□□□□□ -0.35
VPS28-201ENST00000292510 WT1P19544 449 aaPredicted RBP12.84□□□□□ -0.35
VPS28-201ENST00000292510 CMPK1P30085 196 aa12.84□□□□□ -0.35
VPS28-201ENST00000292510 ATP1A2P50993 1020 aa12.84□□□□□ -0.35
VPS28-201ENST00000292510 PMS2P54278 862 aa12.84□□□□□ -0.35
VPS28-201ENST00000292510 DLG1Q12959 904 aa12.84□□□□□ -0.35
VPS28-201ENST00000292510 NAE1Q13564 534 aa12.84□□□□□ -0.35
VPS28-201ENST00000292510 CSHL1Q14406 222 aa12.84□□□□□ -0.35
VPS28-201ENST00000292510 ICE2Q659A1 982 aa12.84□□□□□ -0.35
VPS28-201ENST00000292510 C6orf15Q6UXA7 325 aaPredicted RBP12.84□□□□□ -0.35
VPS28-201ENST00000292510 RAPH1Q70E73 1250 aa12.84□□□□□ -0.35
VPS28-201ENST00000292510 BPHLQ86WA6 291 aaPredicted RBP12.84□□□□□ -0.35
VPS28-201ENST00000292510 NLGN4XQ8N0W4 816 aa12.84□□□□□ -0.35
VPS28-201ENST00000292510 IL22RA1Q8N6P7 574 aa12.84□□□□□ -0.35
VPS28-201ENST00000292510 SLC38A9Q8NBW4 561 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms