RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 SHMT2P34897 504 aa19.49■□□□□ 0.71
VPS53-201ENST00000291074 GZMMP51124 257 aa19.49■□□□□ 0.71
VPS53-201ENST00000291074 AP1S2P56377 157 aa19.49■□□□□ 0.71
VPS53-201ENST00000291074 HTRA4P83105 476 aaPredicted RBP19.49■□□□□ 0.71
VPS53-201ENST00000291074 IRF8Q02556 426 aa19.49■□□□□ 0.71
VPS53-201ENST00000291074 ADNP2Q6IQ32 1131 aa19.49■□□□□ 0.71
VPS53-201ENST00000291074 NOXRED1Q6NXP6 359 aa19.49■□□□□ 0.71
VPS53-201ENST00000291074 RASGEF1AQ8N9B8 481 aa19.49■□□□□ 0.71
VPS53-201ENST00000291074 MTERF1Q99551 399 aaKnown RBP19.49■□□□□ 0.71
VPS53-201ENST00000291074 C11orf49Q9H6J7 331 aa19.49■□□□□ 0.71
VPS53-201ENST00000291074 MAN2B2Q9Y2E5 1009 aa19.49■□□□□ 0.71
VPS53-201ENST00000291074 TRIM64A6NGJ6 449 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 E7EQ34 232 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 SLC16A5O15375 505 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 SERPINA1P01009 418 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 EPCAMP16422 314 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 ELK4P28324 431 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 PBLDP30039 288 aaPredicted RBP19.48■□□□□ 0.71
VPS53-201ENST00000291074 BDKRB1P46663 353 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 NRIP1P48552 1158 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 RPS6KA3P51812 740 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 CALHM3Q86XJ0 350 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 RAVER1Q8IY67 606 aaKnown RBP19.48■□□□□ 0.71
VPS53-201ENST00000291074 DDHD1Q8NEL9 900 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 CDC26Q8NHZ8 85 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 MED8Q96G25 268 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 ITCHQ96J02 903 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 IL36AQ9UHA7 158 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 HEMK1Q9Y5R4 338 aaPredicted RBP19.48■□□□□ 0.71
VPS53-201ENST00000291074 B4GAT1O43505 415 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 NOBOXO60393 691 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 SCELO95171 688 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 JUPP14923 745 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 SYN1P17600 705 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 PRPH2P23942 346 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 DCDC1P59894 354 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 CTBSQ01459 385 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 GRIN2CQ14957 1233 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 XKR6Q5GH73 641 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 ATG9BQ674R7 924 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 TMEM132CQ8N3T6 1108 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 TRAM1L1Q8N609 369 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 OR7A2PQ8NGA2 310 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 HIC2Q96JB3 615 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 OCEL1Q9H607 264 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 IRAK4Q9NWZ3 460 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 THEGQ9P2T0 379 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 LRRK1Q38SD2 2015 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 C16orf96A6NNT2 1141 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 FAM220BPB1ANY3 271 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 G3V2T6 193 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 TRMUO75648 421 aaKnown RBP19.48■□□□□ 0.71
VPS53-201ENST00000291074 SLCO2B1O94956 709 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 FTH1P02794 183 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 ASLP04424 464 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 GSTM1P09488 218 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 THRBP10828 461 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 XPAP23025 273 aaPredicted RBP19.48■□□□□ 0.71
VPS53-201ENST00000291074 CTNNB1P35222 781 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 CDK9P50750 372 aaKnown RBP19.48■□□□□ 0.71
VPS53-201ENST00000291074 METAP1P53582 386 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 GSTM4Q03013 218 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 DMC1Q14565 340 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 SYTL3Q4VX76 610 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 TCEAL5Q5H9L2 206 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 GPR149Q86SP6 731 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 THOC6Q86W42 341 aaKnown RBP19.48■□□□□ 0.71
VPS53-201ENST00000291074 ZDHHC13Q8IUH4 622 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 FBXL8Q96CD0 374 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 DNAJB9Q9UBS3 223 aa19.48■□□□□ 0.71
VPS53-201ENST00000291074 KIAA0355O15063 1070 aa19.47■□□□□ 0.71
VPS53-201ENST00000291074 KPNA5O15131 536 aa19.47■□□□□ 0.71
VPS53-201ENST00000291074 DDX6P26196 483 aaKnown RBP eCLIP19.47■□□□□ 0.71
VPS53-201ENST00000291074 NAE1Q13564 534 aa19.47■□□□□ 0.71
VPS53-201ENST00000291074 DOK6Q6PKX4 331 aa19.47■□□□□ 0.71
VPS53-201ENST00000291074 GPR141Q7Z602 305 aa19.47■□□□□ 0.71
VPS53-201ENST00000291074 GRASPQ7Z6J2 395 aaPredicted RBP19.47■□□□□ 0.71
VPS53-201ENST00000291074 GPR180Q86V85 440 aa19.47■□□□□ 0.71
VPS53-201ENST00000291074 CLVS1Q8IUQ0 354 aaPredicted RBP19.47■□□□□ 0.71
VPS53-201ENST00000291074 POF1BQ8WVV4 589 aa19.47■□□□□ 0.71
VPS53-201ENST00000291074 TESCQ96BS2 214 aa19.47■□□□□ 0.71
VPS53-201ENST00000291074 LRRC3BQ96PB8 259 aa19.47■□□□□ 0.71
VPS53-201ENST00000291074 WRAP53Q9BUR4 548 aaKnown RBP19.47■□□□□ 0.71
VPS53-201ENST00000291074 RMND5AQ9H871 391 aa19.47■□□□□ 0.71
VPS53-201ENST00000291074 DCAF13Q9NV06 445 aaKnown RBP19.47■□□□□ 0.71
VPS53-201ENST00000291074 TUBA8Q9NY65 449 aaPredicted RBP19.47■□□□□ 0.71
VPS53-201ENST00000291074 IRAK3Q9Y616 596 aa19.47■□□□□ 0.71
VPS53-201ENST00000291074 RFXANKO14593 260 aa19.47■□□□□ 0.71
VPS53-201ENST00000291074 EFNA1P20827 205 aaPredicted RBP19.47■□□□□ 0.71
VPS53-201ENST00000291074 MAP4P27816 1152 aaKnown RBP19.47■□□□□ 0.71
VPS53-201ENST00000291074 IRS1P35568 1242 aa19.47■□□□□ 0.71
VPS53-201ENST00000291074 ZNF284Q2VY69 593 aa19.47■□□□□ 0.71
VPS53-201ENST00000291074 ANKRD26P1Q6NSI1 321 aa19.47■□□□□ 0.71
VPS53-201ENST00000291074 KIAA0907Q7Z7F0 614 aaPredicted RBP19.47■□□□□ 0.71
VPS53-201ENST00000291074 TMEM179BQ7Z7N9 219 aa19.47■□□□□ 0.71
VPS53-201ENST00000291074 RASGRP3Q8IV61 690 aa19.47■□□□□ 0.71
VPS53-201ENST00000291074 BTN2A2Q8WVV5 523 aa19.47■□□□□ 0.71
VPS53-201ENST00000291074 ZSCAN5AQ9BUG6 496 aa19.47■□□□□ 0.71
VPS53-201ENST00000291074 NPLQ9BXD5 320 aaPredicted RBP19.47■□□□□ 0.71
VPS53-201ENST00000291074 REXO4Q9GZR2 422 aaKnown RBP19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms