RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 CENPBD1B2RD01 187 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 PPP6CO00743 305 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 ANKRD28O15084 1053 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 CRCPO75575 148 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 EPOP01588 193 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 MMP2P08253 660 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 PCSK2P16519 638 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 PIGAP37287 484 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 STARD6P59095 220 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 CSNK2BP67870 215 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 KIAA0040Q15053 153 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 PLEKHG6Q3KR16 790 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 LDLRAP1Q5SW96 308 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 CAPN13Q6MZZ7 669 aaPredicted RBP10.07□□□□□ -0.8
UPF3B-201ENST00000276201 TPRG1Q6ZUI0 275 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 SYVN1Q86TM6 617 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 AKAP14Q86UN6 197 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 SLC22A16Q86VW1 577 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 DCP2Q8IU60 420 aaKnown RBP10.07□□□□□ -0.8
UPF3B-201ENST00000276201 PLPP6Q8IY26 295 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 FLCNQ8NFG4 579 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 IPCEF1Q8WWN9 437 aaPredicted RBP10.07□□□□□ -0.8
UPF3B-201ENST00000276201 SGCDQ92629 289 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 NSUN5Q96P11 429 aaKnown RBP10.07□□□□□ -0.8
UPF3B-201ENST00000276201 SIGLEC11Q96RL6 698 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 KCNA7Q96RP8 456 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 ASPSCR1Q9BZE9 553 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 DSN1Q9H410 356 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.07□□□□□ -0.8
UPF3B-201ENST00000276201 MARCH4Q9P2E8 410 aaPredicted RBP10.07□□□□□ -0.8
UPF3B-201ENST00000276201 TMEFF2Q9UIK5 374 aaPredicted RBP10.07□□□□□ -0.8
UPF3B-201ENST00000276201 PCDHGA10Q9Y5H3 936 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 ORC6Q9Y5N6 252 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 KMT2EQ8IZD2 1858 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 CD3EAPO15446 510 aaKnown RBP10.07□□□□□ -0.8
UPF3B-201ENST00000276201 RPP40O75818 363 aaKnown RBP10.07□□□□□ -0.8
UPF3B-201ENST00000276201 SNX4O95219 450 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 ATXN1LP0C7T5 689 aaKnown RBP10.07□□□□□ -0.8
UPF3B-201ENST00000276201 CD6P30203 668 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 DCTP40126 519 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 ST13P50502 369 aaKnown RBP10.07□□□□□ -0.8
UPF3B-201ENST00000276201 ARSDP51689 593 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 IMPG1Q17R60 797 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 FUT11Q495W5 492 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 TIGD2Q4W5G0 525 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 PAGE2BQ5JRK9 111 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 PIM3Q86V86 326 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 NKAPQ8N5F7 415 aaKnown RBP10.07□□□□□ -0.8
UPF3B-201ENST00000276201 OR52K2Q8NGK3 314 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 FCGR1BQ92637 280 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 WBP2Q969T9 261 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 SLC47A1Q96FL8 570 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 DGCR6LQ9BY27 220 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 KAT8Q9H7Z6 458 aaKnown RBP10.07□□□□□ -0.8
UPF3B-201ENST00000276201 ASIC5Q9NY37 505 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 CFAP97Q9P2B7 532 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 NUDT5Q9UKK9 219 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 WNT6Q9Y6F9 365 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 PIAS3Q9Y6X2 628 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 F5P12259 2224 aa10.07□□□□□ -0.8
UPF3B-201ENST00000276201 PABPN1LA6NDY0 278 aaKnown RBP10.06□□□□□ -0.8
UPF3B-201ENST00000276201 OTOL1A6NHN0 477 aaPredicted RBP10.06□□□□□ -0.8
UPF3B-201ENST00000276201 FAM220BPB1ANY3 271 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 SCAMP3O14828 347 aaKnown RBP10.06□□□□□ -0.8
UPF3B-201ENST00000276201 DYRK3O43781 588 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 CST1P01037 141 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 FGF1P05230 155 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 HLA-DPA1P20036 260 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 EFNA1P20827 205 aaPredicted RBP10.06□□□□□ -0.8
UPF3B-201ENST00000276201 CD72P21854 359 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 MAGEA2P43356 314 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 SOX9P48436 509 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 KPNA1P52294 538 aaPredicted RBP10.06□□□□□ -0.8
UPF3B-201ENST00000276201 STC1P52823 247 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 C10orf120Q5SQS8 335 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 ATAD3BQ5T9A4 648 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 UBE2UQ5VVX9 321 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 ATG9BQ674R7 924 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 ASTLQ6HA08 431 aaPredicted RBP10.06□□□□□ -0.8
UPF3B-201ENST00000276201 SHQ1Q6PI26 577 aaKnown RBP10.06□□□□□ -0.8
UPF3B-201ENST00000276201 LYSMD2Q8IV50 215 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 GLB1L3Q8NCI6 653 aaPredicted RBP10.06□□□□□ -0.8
UPF3B-201ENST00000276201 OR2T11Q8NH01 316 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 MCOLN3Q8TDD5 553 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 CSGALNACT1Q8TDX6 532 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 ATL1Q8WXF7 558 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 RHBDF1Q96CC6 855 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 SHDQ96IW2 340 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 KLF16Q9BXK1 252 aaPredicted RBP10.06□□□□□ -0.8
UPF3B-201ENST00000276201 FOXQ1Q9C009 403 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 NACA2Q9H009 215 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 ACTR8Q9H981 624 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 SMURF2Q9HAU4 748 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 SACM1LQ9NTJ5 587 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 SCN3BQ9NY72 215 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 SLAMF8Q9P0V8 285 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 RNF112Q9ULX5 631 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 USP22Q9UPT9 525 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 LRRC14BA6NHZ5 514 aa10.06□□□□□ -0.8
UPF3B-201ENST00000276201 SUPT3HB4E1H0 165 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms