RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 CEP295Q9C0D2 2601 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 ZNF839A8K0R7 811 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 GOLGA8RI6L899 631 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 NRP2O60462 931 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 BRINP1O60477 761 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 KLHL2O95198 593 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 MAGP20916 626 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 RPA3P35244 121 aaPredicted RBP12.29□□□□□ -0.44
SS18-202ENST00000269138 ARL4DP49703 201 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 TBPL1P62380 186 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 HSD11B2P80365 405 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 MC2RQ01718 297 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 TGFBIQ15582 683 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 FAM83EQ2M2I3 478 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 FRA10AC1Q70Z53 315 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 CCDC91Q7Z6B0 441 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 D2HGDHQ8N465 521 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 OR2L3Q8NG85 312 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 MDM1Q8TC05 714 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 USP7Q93009 1102 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 EXT2Q93063 718 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 SLC22A18Q96BI1 424 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 PYCR2Q96C36 320 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 NXPE2Q96DL1 559 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 MED8Q96G25 268 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 SLC46A1Q96NT5 459 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 EGFL8Q99944 293 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 ASCL3Q9NQ33 180 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 SOHLH2Q9NX45 425 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 SLC39A1Q9NY26 324 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 RNF112Q9ULX5 631 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 SH2B3Q9UQQ2 575 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 BTRCQ9Y297 605 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 PCDHB11Q9Y5F2 797 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 PCDHGA8Q9Y5G5 932 aa12.29□□□□□ -0.44
SS18-202ENST00000269138 PABPN1LA6NDY0 278 aaKnown RBP12.28□□□□□ -0.44
SS18-202ENST00000269138 C1QTNF9BB2RNN3 333 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 B4E171 279 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 CTIFO43310 598 aaKnown RBP12.28□□□□□ -0.44
SS18-202ENST00000269138 HCRTR1O43613 425 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 ANXA5P08758 320 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 C1QTNF9P0C862 333 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 TSPAN7P41732 249 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 GRIA3P42263 894 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 CDKL1Q00532 357 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 FOXM1Q08050 763 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 IFFO1Q0D2I5 559 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 GPR19Q15760 415 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 FBXO48Q5FWF7 155 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 THEMIS2Q5TEJ8 643 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 FCRL6Q6DN72 434 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 FIGLAQ6QHK4 219 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 CDHR3Q6ZTQ4 885 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 CLEC14AQ86T13 490 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 KMT5CQ86Y97 462 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 CARFQ8N187 725 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 C19orf47Q8N9M1 422 aaKnown RBP12.28□□□□□ -0.44
SS18-202ENST00000269138 OR56A3Q8NH54 315 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 STAG3L4Q8TBR4 150 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 RHBDF1Q96CC6 855 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 OR6C1Q96RD1 312 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 ATOH8Q96SQ7 321 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 SGPP1Q9BX95 441 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 PPCSQ9HAB8 311 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 SLC6A20Q9NP91 592 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 CCDC177Q9NQR7 707 aaPredicted RBP12.28□□□□□ -0.44
SS18-202ENST00000269138 PCMTD2Q9NV79 361 aa12.28□□□□□ -0.44
SS18-202ENST00000269138 INTS7Q9NVH2 962 aaKnown RBP12.28□□□□□ -0.44
SS18-202ENST00000269138 IGKV1-8A0A0C4DH67 115 aa12.27□□□□□ -0.44
SS18-202ENST00000269138 C9orf172C9J069 976 aa12.27□□□□□ -0.44
SS18-202ENST00000269138 UBXN8O00124 270 aa12.27□□□□□ -0.44
SS18-202ENST00000269138 TAPBPO15533 448 aa12.27□□□□□ -0.44
SS18-202ENST00000269138 KERAO60938 352 aa12.27□□□□□ -0.44
SS18-202ENST00000269138 MT-ND3P03897 115 aa12.27□□□□□ -0.44
SS18-202ENST00000269138 PYGBP11216 843 aa12.27□□□□□ -0.44
SS18-202ENST00000269138 RBMS1P29558 406 aaKnown RBP12.27□□□□□ -0.44
SS18-202ENST00000269138 CMPK1P30085 196 aa12.27□□□□□ -0.44
SS18-202ENST00000269138 MLLT3P42568 568 aaPredicted RBP12.27□□□□□ -0.44
SS18-202ENST00000269138 GDF5P43026 501 aa12.27□□□□□ -0.44
SS18-202ENST00000269138 PRDX1Q06830 199 aaKnown RBP12.27□□□□□ -0.44
SS18-202ENST00000269138 ACAP2Q15057 778 aa12.27□□□□□ -0.44
SS18-202ENST00000269138 RASA2Q15283 850 aa12.27□□□□□ -0.44
SS18-202ENST00000269138 DEFB110Q30KQ9 67 aa12.27□□□□□ -0.44
SS18-202ENST00000269138 PTCHD3Q3KNS1 767 aa12.27□□□□□ -0.44
SS18-202ENST00000269138 BEND6Q5SZJ8 279 aaPredicted RBP12.27□□□□□ -0.44
SS18-202ENST00000269138 PRAMEF13Q5VWM6 474 aa12.27□□□□□ -0.44
SS18-202ENST00000269138 ICE2Q659A1 982 aa12.27□□□□□ -0.44
SS18-202ENST00000269138 ATL1Q8WXF7 558 aa12.27□□□□□ -0.44
SS18-202ENST00000269138 ESAMQ96AP7 390 aa12.27□□□□□ -0.44
SS18-202ENST00000269138 OR4K3Q96R72 315 aa12.27□□□□□ -0.44
SS18-202ENST00000269138 TAAR9Q96RI9 348 aa12.27□□□□□ -0.44
SS18-202ENST00000269138 DPH7Q9BTV6 452 aa12.27□□□□□ -0.44
SS18-202ENST00000269138 PDE7BQ9NP56 450 aa12.27□□□□□ -0.44
SS18-202ENST00000269138 MRPS30Q9NP92 439 aaKnown RBP12.27□□□□□ -0.44
SS18-202ENST00000269138 FBXO8Q9NRD0 319 aa12.27□□□□□ -0.44
SS18-202ENST00000269138 CUEDC1Q9NWM3 386 aaPredicted RBP12.27□□□□□ -0.44
SS18-202ENST00000269138 CD274Q9NZQ7 290 aa12.27□□□□□ -0.44
SS18-202ENST00000269138 FOXJ2Q9P0K8 574 aa12.27□□□□□ -0.44
SS18-202ENST00000269138 B3GALT1Q9Y5Z6 326 aa12.27□□□□□ -0.44
SS18-202ENST00000269138 ANKRD12Q6UB98 2062 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms