RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 RAPGEFL1Q9UHV5 662 aa12.66□□□□□ -0.38
SNX1-201ENST00000261889 PPT2Q9UMR5 302 aa12.66□□□□□ -0.38
SNX1-201ENST00000261889 AIREO43918 545 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 HOXC13P31276 330 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 FEN1P39748 380 aaKnown RBP12.65□□□□□ -0.38
SNX1-201ENST00000261889 FCGRTP55899 365 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 IFITM2Q01629 132 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 SP3Q02447 781 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 SMARCB1Q12824 385 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 CPZQ66K79 652 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 BCDIN3DQ7Z5W3 292 aaKnown RBP12.65□□□□□ -0.38
SNX1-201ENST00000261889 AKAP14Q86UN6 197 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 ADHFE1Q8IWW8 467 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 ZNF683Q8IZ20 524 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 OR8H2Q8N162 312 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 TRPV1Q8NER1 839 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 GPR156Q8NFN8 814 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 DYNC2LI1Q8TCX1 351 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 SMAD5Q99717 465 aaKnown RBP12.65□□□□□ -0.38
SNX1-201ENST00000261889 FAM124BQ9H5Z6 455 aaPredicted RBP12.65□□□□□ -0.38
SNX1-201ENST00000261889 LRTM1Q9HBL6 345 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 ACOT13Q9NPJ3 140 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 KRT84Q9NSB2 600 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 TMEM248Q9NWD8 314 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 SPATA7Q9P0W8 599 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 TBC1D14Q9P2M4 693 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 TLR6Q9Y2C9 796 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 NUMA1Q14980 2115 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 IFRD1O00458 451 aaPredicted RBP12.65□□□□□ -0.38
SNX1-201ENST00000261889 PFDN6O15212 129 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 RGS10O43665 173 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 TLL1O43897 1013 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 CYBAP13498 195 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 TACR2P21452 398 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 MZF1P28698 734 aaPredicted RBP12.65□□□□□ -0.38
SNX1-201ENST00000261889 RPP38P78345 283 aaKnown RBP12.65□□□□□ -0.38
SNX1-201ENST00000261889 LYSMD2Q8IV50 215 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 SPPL2AQ8TCT8 520 aa12.65□□□□□ -0.38
SNX1-201ENST00000261889 GTPBP3Q969Y2 492 aaKnown RBP12.65□□□□□ -0.38
SNX1-201ENST00000261889 J3KTA2 159 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 WWP2O00308 870 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 GUCY1B2O75343 617 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 TULP3O75386 442 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 PRAMEF1O95521 474 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 PDYNP01213 254 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 JUNBP17275 347 aaPredicted RBP12.64□□□□□ -0.39
SNX1-201ENST00000261889 HLA-DPA1P20036 260 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 WEE1P30291 646 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 SSTR4P31391 388 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 SLC19A1P41440 591 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 SERPINB10P48595 397 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 KCNC4Q03721 635 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 FOXM1Q08050 763 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 GANABQ14697 944 aaKnown RBP12.64□□□□□ -0.39
SNX1-201ENST00000261889 PTCHD3Q3KNS1 767 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 POM121L1PQ3SYA9 428 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 CTXN3Q4LDR2 81 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 PRSS55Q6UWB4 352 aaPredicted RBP12.64□□□□□ -0.39
SNX1-201ENST00000261889 SELENOMQ8WWX9 145 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 ACPTQ9BZG2 426 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 ASB8Q9H765 288 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 KAT8Q9H7Z6 458 aaKnown RBP12.64□□□□□ -0.39
SNX1-201ENST00000261889 ADPRHL2Q9NX46 363 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 OPTCQ9UBM4 332 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 UBA2Q9UBT2 640 aaPredicted RBP12.64□□□□□ -0.39
SNX1-201ENST00000261889 GPSM3Q9Y4H4 160 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 SAP18O00422 153 aaKnown RBP12.64□□□□□ -0.39
SNX1-201ENST00000261889 RFXANKO14593 260 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 PRAMEF11O60813 436 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 GABARAPO95166 117 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 LPOP22079 712 aaPredicted RBP12.64□□□□□ -0.39
SNX1-201ENST00000261889 HOXA9P31269 272 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 LRIT3Q3SXY7 679 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 AFTPHQ6ULP2 937 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 CCBE1Q6UXH8 406 aaPredicted RBP12.64□□□□□ -0.39
SNX1-201ENST00000261889 TSPAN33Q86UF1 283 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 SERPINA9Q86WD7 417 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 ARMC8Q8IUR7 673 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 TERB1Q8NA31 727 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 SLC39A13Q96H72 371 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 ZFYVE19Q96K21 471 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 ZNF300Q96RE9 604 aaPredicted RBP12.64□□□□□ -0.39
SNX1-201ENST00000261889 PKMYT1Q99640 499 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 Q9Y3F1 56 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 SCN10AQ9Y5Y9 1956 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 CHD7Q9P2D1 2997 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 F5H5T6 163 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 CLDN7O95471 211 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 ADRA2AP08913 450 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 CYP2C18P33260 490 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 S100A3P33764 101 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 SLC35A2P78381 396 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 BOP1Q14137 746 aaKnown RBP12.64□□□□□ -0.39
SNX1-201ENST00000261889 RNF219Q5W0B1 726 aaPredicted RBP12.64□□□□□ -0.39
SNX1-201ENST00000261889 MON1AQ86VX9 555 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 MEX3DQ86XN8 651 aaKnown RBP12.64□□□□□ -0.39
SNX1-201ENST00000261889 HIPK1Q86Z02 1210 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 KLHDC8BQ8IXV7 354 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 CHPFQ8IZ52 775 aa12.64□□□□□ -0.39
SNX1-201ENST00000261889 CARNMT1Q8N4J0 409 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms