RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 PDYNP01213 254 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 STSP08842 583 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 SOAT1P35610 550 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 GJA8P48165 433 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 RPIAP49247 311 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 DAPP51397 102 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 GRSF1Q12849 480 aaKnown RBP eCLIP11.66□□□□□ -0.54
USHBP1-201ENST00000252597 TUBA3CQ13748 450 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 BTG3Q14201 252 aaPredicted RBP11.66□□□□□ -0.54
USHBP1-201ENST00000252597 TIGD6Q17RP2 521 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 LAIR1Q6GTX8 287 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 DESI1Q6ICB0 168 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 LIMS2Q7Z4I7 341 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 C2orf73Q8N5S3 287 aaPredicted RBP11.66□□□□□ -0.54
USHBP1-201ENST00000252597 CELF2-AS1Q8N7Q2 184 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 S100ZQ8WXG8 99 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 APIPQ96GX9 242 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 HSH2DQ96JZ2 352 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 DOK1Q99704 481 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 TTPALQ9BTX7 342 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 GPR62Q9BZJ7 368 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 BRINP2Q9C0B6 783 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 RAD18Q9NS91 495 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 THUMPD1Q9NXG2 353 aaKnown RBP11.66□□□□□ -0.54
USHBP1-201ENST00000252597 TNPO3Q9Y5L0 923 aaKnown RBP11.66□□□□□ -0.54
USHBP1-201ENST00000252597 CLIC1O00299 241 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 STX16O14662 325 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 SSX4O60224 188 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 SCELO95171 688 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 TSPAN12O95859 305 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 SPNP16150 400 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 CA5AP35218 305 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 GRK3P35626 688 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 KRT20P35900 424 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 ATP5C1P36542 298 aaKnown RBP11.66□□□□□ -0.54
USHBP1-201ENST00000252597 ALDH7A1P49419 539 aaKnown RBP11.66□□□□□ -0.54
USHBP1-201ENST00000252597 ZNF140P52738 457 aaPredicted RBP11.66□□□□□ -0.54
USHBP1-201ENST00000252597 CDH12P55289 794 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 PCBP1Q15365 356 aaKnown RBP eCLIP11.66□□□□□ -0.54
USHBP1-201ENST00000252597 BEND5Q7L4P6 421 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 ATL1Q8WXF7 558 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 FOXJ1Q92949 421 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 IL4I1Q96RQ9 567 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 RMND5AQ9H871 391 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 DUSP12Q9UNI6 340 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 PLXNB2O15031 1838 aa11.66□□□□□ -0.54
USHBP1-201ENST00000252597 KIAA0100Q14667 2235 aaKnown RBP11.65□□□□□ -0.54
USHBP1-201ENST00000252597 SLC22A1O15245 554 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 TBL1XO60907 577 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 FABP3P05413 133 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 HOXB8P17481 243 aaPredicted RBP11.65□□□□□ -0.54
USHBP1-201ENST00000252597 CD40LGP29965 261 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 RRM2P31350 389 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 LIPAP38571 399 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 CLK3P49761 638 aaKnown RBP11.65□□□□□ -0.54
USHBP1-201ENST00000252597 FKBP1BP68106 108 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 PLD1Q13393 1074 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 TOP3AQ13472 1001 aaPredicted RBP11.65□□□□□ -0.54
USHBP1-201ENST00000252597 PRSS36Q5K4E3 855 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 TPRG1LQ5T0D9 272 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 ZNF691Q5VV52 312 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 LAIR2Q6ISS4 152 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.65□□□□□ -0.54
USHBP1-201ENST00000252597 RFLNAQ6ZTI6 216 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 HMGN2P46Q86SG4 172 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.65□□□□□ -0.54
USHBP1-201ENST00000252597 OR5AK3PQ8NH89 298 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 UBASH3BQ8TF42 649 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 FKBP10Q96AY3 582 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 SH3KBP1Q96B97 665 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 SNX6Q9UNH7 406 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 SLC45A1Q9Y2W3 748 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 PLXNA1Q9UIW2 1896 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 SYNDIG1LA6NDD5 238 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 EPN2O95208 641 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 APOL3O95236 402 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 ZNF865P0CJ78 1059 aaPredicted RBP11.65□□□□□ -0.54
USHBP1-201ENST00000252597 ITGALP20701 1170 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 KIR3DL1P43629 444 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 PHC1P78364 1004 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 HTRA3P83110 453 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 ABRQ12979 859 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 SPANXN2Q5MJ10 180 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.65□□□□□ -0.54
USHBP1-201ENST00000252597 C1QTNF12Q5T7M4 302 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 STEAP3Q658P3 488 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 MSRB3Q8IXL7 192 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 SCAIQ8N9R8 606 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 TMEM203Q969S6 136 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 SUSD3Q96L08 255 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 COPS8Q99627 209 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 MROQ9BYG7 248 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 NUDT4Q9NZJ9 180 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 SPASTQ9UBP0 616 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 VPS9D1Q9Y2B5 631 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 A0A0C4DFX4 3053 aa11.65□□□□□ -0.54
USHBP1-201ENST00000252597 MANBAO00462 879 aa11.65□□□□□ -0.55
USHBP1-201ENST00000252597 ACSL4O60488 711 aa11.65□□□□□ -0.55
USHBP1-201ENST00000252597 SLC10A3P09131 477 aa11.65□□□□□ -0.55
USHBP1-201ENST00000252597 C7P10643 843 aa11.65□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms