RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 ZDHHC21Q8IVQ6 265 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 MICU2Q8IYU8 434 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 ZNF366Q8N895 744 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 KLHL23Q8NBE8 558 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 DDHD1Q8NEL9 900 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 RAD21L1Q9H4I0 556 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 GORASP2Q9H8Y8 452 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 MARCH7Q9H992 704 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 DNAJB9Q9UBS3 223 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 ENPP5Q9UJA9 477 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 SH3GLB1Q9Y371 365 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 CFAP99D6REC4 459 aa10.4□□□□□ -0.75
USP28-201ENST00000003302 J3KTA2 159 aa10.4□□□□□ -0.75
USP28-201ENST00000003302 ANGPTL1O95841 491 aa10.4□□□□□ -0.75
USP28-201ENST00000003302 ESR1P03372 595 aa10.4□□□□□ -0.75
USP28-201ENST00000003302 POU2F1P14859 743 aa10.4□□□□□ -0.75
USP28-201ENST00000003302 PSMB9P28065 219 aa10.4□□□□□ -0.75
USP28-201ENST00000003302 PTGER3P43115 390 aa10.4□□□□□ -0.75
USP28-201ENST00000003302 TGM4P49221 684 aa10.4□□□□□ -0.75
USP28-201ENST00000003302 SEPHS1P49903 392 aa10.4□□□□□ -0.75
USP28-201ENST00000003302 SMAD3P84022 425 aaKnown RBP10.4□□□□□ -0.75
USP28-201ENST00000003302 NPTX1Q15818 432 aa10.4□□□□□ -0.75
USP28-201ENST00000003302 PTCHD3Q3KNS1 767 aa10.4□□□□□ -0.75
USP28-201ENST00000003302 C5orf22Q49AR2 442 aa10.4□□□□□ -0.75
USP28-201ENST00000003302 ZCCHC8Q6NZY4 707 aaKnown RBP10.4□□□□□ -0.75
USP28-201ENST00000003302 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.4□□□□□ -0.75
USP28-201ENST00000003302 AHSA2Q719I0 299 aa10.4□□□□□ -0.75
USP28-201ENST00000003302 FAM83FQ8NEG4 500 aaPredicted RBP10.4□□□□□ -0.75
USP28-201ENST00000003302 OPTCQ9UBM4 332 aa10.4□□□□□ -0.75
USP28-201ENST00000003302 POU2F3Q9UKI9 436 aa10.4□□□□□ -0.75
USP28-201ENST00000003302 ZNF701M0R085 212 aaPredicted RBP10.39□□□□□ -0.75
USP28-201ENST00000003302 BCKDKO14874 412 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 SCN2BO60939 215 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 UMPSP11172 480 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 FCGR1AP12314 374 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 HALP42357 657 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 GNPDA1P46926 289 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 WNT3P56703 355 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 CYP4F8P98187 520 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 GSTM4Q03013 218 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 GAB1Q13480 694 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 BOP1Q14137 746 aaKnown RBP10.39□□□□□ -0.75
USP28-201ENST00000003302 UGT8Q16880 541 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 PRSS53Q2L4Q9 553 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 ADGRF1Q5T601 910 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 CALHM3Q86XJ0 350 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 SLC7A5P1Q8MH63 180 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 HEPHQ9BQS7 1158 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 REXO4Q9GZR2 422 aaKnown RBP10.39□□□□□ -0.75
USP28-201ENST00000003302 CLPBQ9H078 707 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 ZFYVE1Q9HBF4 777 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 AKIP1Q9NQ31 210 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 GPATCH2Q9NW75 528 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 ACSL6Q9UKU0 697 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 SAP18O00422 153 aaKnown RBP10.39□□□□□ -0.75
USP28-201ENST00000003302 IMPDH2P12268 514 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 PORP16435 677 aaPredicted RBP10.39□□□□□ -0.75
USP28-201ENST00000003302 SLC35A2P78381 396 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 KCNC4Q03721 635 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 SKIV2LQ15477 1246 aaKnown RBP10.39□□□□□ -0.75
USP28-201ENST00000003302 SPATC1Q76KD6 591 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 PAF1Q8N7H5 531 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 ARL10Q8N8L6 244 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 SORCS1Q8WY21 1168 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 PEX13Q92968 403 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 SH2B3Q9UQQ2 575 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 ALPK3Q96L96 1907 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 NDUFS2O75306 463 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 LAMP1P11279 417 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 JUNBP17275 347 aaPredicted RBP10.39□□□□□ -0.75
USP28-201ENST00000003302 MAGEA11P43364 429 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 TMBIM6P55061 237 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 TPD52L3Q96J77 140 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 CCDC138Q96M89 665 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 PPP1R2P1Q96PQ5 205 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 KCNC2Q96PR1 638 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 LINC00597Q9H2U6 94 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 THG1LQ9NWX6 298 aaKnown RBP10.39□□□□□ -0.75
USP28-201ENST00000003302 DAPK2Q9UIK4 370 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 TBKBP1A7MCY6 615 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 NADKO95544 446 aaPredicted RBP10.39□□□□□ -0.75
USP28-201ENST00000003302 OTCP00480 354 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 COX20Q5RI15 118 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 FAM124AQ86V42 546 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 HTRA1Q92743 480 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 GLMNQ92990 594 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 GPN2Q9H9Y4 310 aaPredicted RBP10.39□□□□□ -0.75
USP28-201ENST00000003302 ARL15Q9NXU5 204 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 NUDT4Q9NZJ9 180 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 FNIP2Q9P278 1114 aa10.39□□□□□ -0.75
USP28-201ENST00000003302 TCF20Q9UGU0 1960 aaKnown RBP10.38□□□□□ -0.75
USP28-201ENST00000003302 A0A1B0GVM2 712 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 OR2AG2A6NM03 316 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 PCDH7O60245 1069 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 PGLSO95336 258 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 IGFBP5P24593 272 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 NRIP1P48552 1158 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 RPIAP49247 311 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 METAP1P53582 386 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 PTSQ03393 145 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms