RNA–Protein interactions for RNA: ENST00000642021.1

PHGDH-233, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 2,794 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-233	ENST00000642021	UPK3BL1	B0FP48	263 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	CLDN25	C9JDP6	229 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	UPK3BL2	E5RIL1	263 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	ERN1	O75460	977 aa	Known RBP	13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	STK16	O75716	305 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	PARN	O95453	639 aa	Known RBP	13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	UGT2B4	P06133	528 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	CCDC159	P0C7I6	412 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	BPI	P17213	487 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	ACRV1	P26436	265 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	RXRG	P48443	463 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	TOP3A	Q13472	1001 aa	Predicted RBP	13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	SMU1	Q2TAY7	513 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	PGS1	Q32NB8	556 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	PUS10	Q3MIT2	529 aa	Known RBP	13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	PERM1	Q5SV97	790 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	NIPAL1	Q6NVV3	410 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	LRRC8D	Q7L1W4	858 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	SLCO6A1	Q86UG4	719 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	PIK3C3	Q8NEB9	887 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	UBE2F	Q969M7	185 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	PLD4	Q96BZ4	506 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	ERLEC1	Q96DZ1	483 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	ALPK1	Q96QP1	1244 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	CORO1B	Q9BR76	489 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	MAGIX	Q9H6Y5	334 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	PARVB	Q9HBI1	364 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	ASIC5	Q9NY37	505 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	MTRR	Q9UBK8	725 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	INTS6	Q9UL03	887 aa	Known RBP	13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	ERVK-11	Q9UQG0	969 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	OR51B4	Q9Y5P0	310 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	PMF1-BGLAP	U3KQ54	211 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	FRMPD3	Q5JV73	1810 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	WDR47	O94967	919 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	SEC24A	O95486	1093 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	PRKAR2A	P13861	404 aa	Known RBP	13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	CDH3	P22223	829 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	IGFBP5	P24593	272 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	S100A3	P33764	101 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	OR1D2	P34982	312 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	HNF1B	P35680	557 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	CLDN8	P56748	225 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	GTF2H3	Q13889	308 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	NPTX1	Q15818	432 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	CDKN3	Q16667	212 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	INO80D	Q53TQ3	878 aa	Predicted RBP	13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	DOK6	Q6PKX4	331 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	HIPK1	Q86Z02	1210 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	RNF175	Q8N4F7	328 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	CDK5RAP1	Q96SZ6	601 aa	Known RBP	13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	TTPAL	Q9BTX7	342 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	RIBC2	Q9H4K1	309 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021	AKIP1	Q9NQ31	210 aa		13.48	□□□□□ -0.25
PHGDH-233	ENST00000642021		A0A096LPI6	279 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	NBN	O60934	754 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	CLDN9	O95484	217 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	ZNF682	O95780	498 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	GALT	P07902	379 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	NAT2	P11245	290 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	CSK	P41240	450 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	MAGEA2	P43356	314 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	MASP1	P48740	699 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	ACLY	P53396	1101 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	VBP1	P61758	197 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	OXA1L	Q15070	435 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	ZC3H12B	Q5HYM0	836 aa	Known RBP	13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	SHQ1	Q6PI26	577 aa	Known RBP	13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	FKBP9P1	Q75LS8	142 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	TSPAN33	Q86UF1	283 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	CHCHD4	Q8N4Q1	142 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	PCDH12	Q9NPG4	1184 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	AFF4	Q9UHB7	1163 aa	Known RBP	13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	MBD1	Q9UIS9	605 aa	Predicted RBP	13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	MAN2B2	Q9Y2E5	1009 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	PCDHGB1	Q9Y5G3	927 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	TRBV5-4	A0A0C4DH59	114 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021		M0QX08	132 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	RECQL5	O94762	991 aa	Predicted RBP	13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	GABARAP	O95166	117 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	HPCAL1	P37235	193 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	FPGS	Q05932	587 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	DGCR6	Q14129	220 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	RNF165	Q6ZSG1	346 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	ZSWIM9	Q86XI8	627 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	GALNT13	Q8IUC8	556 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	APCDD1	Q8J025	514 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	UBTD2	Q8WUN7	234 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	SELENOM	Q8WWX9	145 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	ZNF566	Q969W8	418 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	PYCR2	Q96C36	320 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	ALG14	Q96F25	216 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	APIP	Q96GX9	242 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	SLC22A12	Q96S37	553 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	ZIC5	Q96T25	663 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	KLF16	Q9BXK1	252 aa	Predicted RBP	13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	DUSP21	Q9H596	190 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	RRAGC	Q9HB90	399 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	ITM2B	Q9Y287	266 aa		13.47	□□□□□ -0.25
PHGDH-233	ENST00000642021	KRBA1	A5PL33	1030 aa		13.46	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms