RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 KATNA1O75449 491 aa18.54■□□□□ 0.56
CLN3-260ENST00000637578 KLK3P07288 261 aaPredicted RBP18.54■□□□□ 0.56
CLN3-260ENST00000637578 CHRM3P20309 590 aa18.54■□□□□ 0.56
CLN3-260ENST00000637578 CYP2A7P20853 494 aa18.54■□□□□ 0.56
CLN3-260ENST00000637578 PTPN4P29074 926 aa18.54■□□□□ 0.56
CLN3-260ENST00000637578 CCNFP41002 786 aa18.54■□□□□ 0.56
CLN3-260ENST00000637578 CARSP49589 748 aaKnown RBP18.54■□□□□ 0.56
CLN3-260ENST00000637578 CTBP1Q13363 440 aa18.54■□□□□ 0.56
CLN3-260ENST00000637578 THOC5Q13769 683 aaKnown RBP18.54■□□□□ 0.56
CLN3-260ENST00000637578 CRYMQ14894 314 aa18.54■□□□□ 0.56
CLN3-260ENST00000637578 LCN10Q6JVE6 187 aa18.54■□□□□ 0.56
CLN3-260ENST00000637578 C16orf46Q6P387 395 aa18.54■□□□□ 0.56
CLN3-260ENST00000637578 ZNF549Q6P9A3 640 aa18.54■□□□□ 0.56
CLN3-260ENST00000637578 ZNF605Q86T29 641 aa18.54■□□□□ 0.56
CLN3-260ENST00000637578 ZBED8Q8IZ13 594 aa18.54■□□□□ 0.56
CLN3-260ENST00000637578 ZBTB2Q8N680 514 aa18.54■□□□□ 0.56
CLN3-260ENST00000637578 FBXO36Q8NEA4 188 aa18.54■□□□□ 0.56
CLN3-260ENST00000637578 CALML6Q8TD86 181 aa18.54■□□□□ 0.56
CLN3-260ENST00000637578 APOBEC4Q8WW27 367 aaKnown RBP18.54■□□□□ 0.56
CLN3-260ENST00000637578 CFAP36Q96G28 342 aa18.54■□□□□ 0.56
CLN3-260ENST00000637578 RUFY1Q96T51 708 aa18.54■□□□□ 0.56
CLN3-260ENST00000637578 NAT9Q9BTE0 207 aa18.54■□□□□ 0.56
CLN3-260ENST00000637578 ACTL8Q9H568 366 aa18.54■□□□□ 0.56
CLN3-260ENST00000637578 ACTR5Q9H9F9 607 aaPredicted RBP18.54■□□□□ 0.56
CLN3-260ENST00000637578 SAYSD1Q9NPB0 183 aa18.54■□□□□ 0.56
CLN3-260ENST00000637578 ZC3H7BQ9UGR2 993 aaKnown RBP18.54■□□□□ 0.56
CLN3-260ENST00000637578 CIDEBQ9UHD4 219 aa18.54■□□□□ 0.56
CLN3-260ENST00000637578 RUVBL2Q9Y230 463 aaKnown RBP18.54■□□□□ 0.56
CLN3-260ENST00000637578 ZNF462Q96JM2 2506 aa18.54■□□□□ 0.56
CLN3-260ENST00000637578 BSNQ9UPA5 3926 aa18.54■□□□□ 0.56
CLN3-260ENST00000637578 E7EQ34 232 aa18.53■□□□□ 0.56
CLN3-260ENST00000637578 EIF3HO15372 352 aaKnown RBP eCLIP18.53■□□□□ 0.56
CLN3-260ENST00000637578 TTC4O95801 387 aa18.53■□□□□ 0.56
CLN3-260ENST00000637578 CAPN1P07384 714 aa18.53■□□□□ 0.56
CLN3-260ENST00000637578 RAB40ALP0C0E4 278 aa18.53■□□□□ 0.56
CLN3-260ENST00000637578 ECHS1P30084 290 aa18.53■□□□□ 0.56
CLN3-260ENST00000637578 SLC1A2P43004 574 aa18.53■□□□□ 0.56
CLN3-260ENST00000637578 ERV3-1Q14264 604 aa18.53■□□□□ 0.56
CLN3-260ENST00000637578 DEFB109BQ30KR1 87 aa18.53■□□□□ 0.56
CLN3-260ENST00000637578 CCSMST1Q4G0I0 132 aa18.53■□□□□ 0.56
CLN3-260ENST00000637578 ZNF385CQ66K41 422 aaPredicted RBP18.53■□□□□ 0.56
CLN3-260ENST00000637578 TTC23LQ6PF05 361 aa18.53■□□□□ 0.56
CLN3-260ENST00000637578 CCDC25Q86WR0 208 aa18.53■□□□□ 0.56
CLN3-260ENST00000637578 LMNTD1Q8N9Z9 388 aa18.53■□□□□ 0.56
CLN3-260ENST00000637578 DENND1AQ8TEH3 1009 aa18.53■□□□□ 0.56
CLN3-260ENST00000637578 MR1Q95460 341 aa18.53■□□□□ 0.56
CLN3-260ENST00000637578 FAM136AQ96C01 138 aa18.53■□□□□ 0.56
CLN3-260ENST00000637578 FOPNLQ96NB1 174 aa18.53■□□□□ 0.56
CLN3-260ENST00000637578 FAM129AQ9BZQ8 928 aa18.53■□□□□ 0.56
CLN3-260ENST00000637578 PHACTR1Q9C0D0 580 aa18.53■□□□□ 0.56
CLN3-260ENST00000637578 SLC25A18Q9H1K4 315 aa18.53■□□□□ 0.56
CLN3-260ENST00000637578 CHST8Q9H2A9 424 aa18.53■□□□□ 0.56
CLN3-260ENST00000637578 C20orf96Q9NUD7 363 aaPredicted RBP18.53■□□□□ 0.56
CLN3-260ENST00000637578 SLC39A10Q9ULF5 831 aa18.53■□□□□ 0.56
CLN3-260ENST00000637578 FARSAQ9Y285 508 aaKnown RBP18.53■□□□□ 0.56
CLN3-260ENST00000637578 KCNMB2Q9Y691 235 aa18.53■□□□□ 0.56
CLN3-260ENST00000637578 SEC16AO15027 2179 aa18.53■□□□□ 0.56
CLN3-260ENST00000637578 ZNF749O43361 778 aa18.52■□□□□ 0.56
CLN3-260ENST00000637578 FKBP9O95302 570 aa18.52■□□□□ 0.56
CLN3-260ENST00000637578 BDKRB1P46663 353 aa18.52■□□□□ 0.56
CLN3-260ENST00000637578 CUL1Q13616 776 aa18.52■□□□□ 0.56
CLN3-260ENST00000637578 ACSBG2Q5FVE4 666 aa18.52■□□□□ 0.56
CLN3-260ENST00000637578 NEK10Q6ZWH5 1172 aa18.52■□□□□ 0.56
CLN3-260ENST00000637578 FAM20CQ8IXL6 584 aa18.52■□□□□ 0.56
CLN3-260ENST00000637578 IFT20Q8IY31 132 aa18.52■□□□□ 0.56
CLN3-260ENST00000637578 SERBP1Q8NC51 408 aaKnown RBP eCLIP18.52■□□□□ 0.56
CLN3-260ENST00000637578 MAGEC3Q8TD91 643 aa18.52■□□□□ 0.56
CLN3-260ENST00000637578 SKA2Q8WVK7 121 aaPredicted RBP18.52■□□□□ 0.56
CLN3-260ENST00000637578 KCNJ9Q92806 393 aa18.52■□□□□ 0.56
CLN3-260ENST00000637578 CLIP3Q96DZ5 547 aa18.52■□□□□ 0.56
CLN3-260ENST00000637578 DPH2Q9BQC3 489 aaPredicted RBP18.52■□□□□ 0.56
CLN3-260ENST00000637578 FBXO6Q9NRD1 293 aaPredicted RBP18.52■□□□□ 0.56
CLN3-260ENST00000637578 ENAMQ9NRM1 1142 aa18.52■□□□□ 0.56
CLN3-260ENST00000637578 FBXO5Q9UKT4 447 aa18.52■□□□□ 0.56
CLN3-260ENST00000637578 KLK4Q9Y5K2 254 aa18.52■□□□□ 0.56
CLN3-260ENST00000637578 AP1M2Q9Y6Q5 423 aa18.52■□□□□ 0.56
CLN3-260ENST00000637578 TLN1Q9Y490 2541 aaKnown RBP18.52■□□□□ 0.56
CLN3-260ENST00000637578 BAHCC1Q9P281 2608 aa18.52■□□□□ 0.55
CLN3-260ENST00000637578 PSIP1O75475 530 aaKnown RBP18.51■□□□□ 0.55
CLN3-260ENST00000637578 F7P08709 466 aaPredicted RBP18.51■□□□□ 0.55
CLN3-260ENST00000637578 HBQ1P09105 142 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 PLA2G2AP14555 144 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 MAGP20916 626 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 RPS15P62841 145 aaKnown RBP18.51■□□□□ 0.55
CLN3-260ENST00000637578 KCNAB2Q13303 367 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 CYP2A13Q16696 494 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 SPANXN3Q5MJ09 141 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 STEAP4Q687X5 459 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 CNSTQ6PJW8 725 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 SYVN1Q86TM6 617 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 GPR135Q8IZ08 494 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 C2orf73Q8N5S3 287 aaPredicted RBP18.51■□□□□ 0.55
CLN3-260ENST00000637578 GIMAP7Q8NHV1 300 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 SLC30A3Q99726 388 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 FAM167BQ9BTA0 163 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 NLNQ9BYT8 704 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 SPRTNQ9H040 489 aaPredicted RBP18.51■□□□□ 0.55
CLN3-260ENST00000637578 MTRF1LQ9UGC7 380 aaKnown RBP18.51■□□□□ 0.55
CLN3-260ENST00000637578 PLCL2Q9UPR0 1127 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 POLHQ9Y253 713 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms