RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 DNAJB14Q8TBM8 379 aa15.74■□□□□ 0.11
CLN3-255ENST00000637100 PEX13Q92968 403 aa15.74■□□□□ 0.11
CLN3-255ENST00000637100 CUTCQ9NTM9 273 aa15.74■□□□□ 0.11
CLN3-255ENST00000637100 DUSP10Q9Y6W6 482 aa15.74■□□□□ 0.11
CLN3-255ENST00000637100 MDC1Q14676 2089 aaKnown RBP15.74■□□□□ 0.11
CLN3-255ENST00000637100 CSMD1Q96PZ7 3565 aa15.73■□□□□ 0.11
CLN3-255ENST00000637100 IGLV3-12A0A075B6K2 115 aa15.73■□□□□ 0.11
CLN3-255ENST00000637100 MACROD2A1Z1Q3 448 aa15.73■□□□□ 0.11
CLN3-255ENST00000637100 F8W8V4 182 aa15.73■□□□□ 0.11
CLN3-255ENST00000637100 LRRTM2O43300 516 aa15.73■□□□□ 0.11
CLN3-255ENST00000637100 ALAS2P22557 587 aa15.73■□□□□ 0.11
CLN3-255ENST00000637100 CETN2P41208 172 aa15.73■□□□□ 0.11
CLN3-255ENST00000637100 GDF10P55107 478 aa15.73■□□□□ 0.11
CLN3-255ENST00000637100 PER3P56645 1201 aa15.73■□□□□ 0.11
CLN3-255ENST00000637100 MFAP5Q13361 173 aa15.73■□□□□ 0.11
CLN3-255ENST00000637100 GRM7Q14831 915 aa15.73■□□□□ 0.11
CLN3-255ENST00000637100 TLR1Q15399 786 aa15.73■□□□□ 0.11
CLN3-255ENST00000637100 SPA17Q15506 151 aa15.73■□□□□ 0.11
CLN3-255ENST00000637100 FAM214AQ32MH5 1076 aa15.73■□□□□ 0.11
CLN3-255ENST00000637100 TUBB8Q3ZCM7 444 aa15.73■□□□□ 0.11
CLN3-255ENST00000637100 ATG9BQ674R7 924 aa15.73■□□□□ 0.11
CLN3-255ENST00000637100 FIGLAQ6QHK4 219 aa15.73■□□□□ 0.11
CLN3-255ENST00000637100 DCUN1D3Q8IWE4 304 aa15.73■□□□□ 0.11
CLN3-255ENST00000637100 ASZ1Q8WWH4 475 aa15.73■□□□□ 0.11
CLN3-255ENST00000637100 RELTQ969Z4 430 aa15.73■□□□□ 0.11
CLN3-255ENST00000637100 INTS7Q9NVH2 962 aaKnown RBP15.73■□□□□ 0.11
CLN3-255ENST00000637100 CDC23Q9UJX2 597 aa15.73■□□□□ 0.11
CLN3-255ENST00000637100 KLHL20Q9Y2M5 609 aa15.73■□□□□ 0.11
CLN3-255ENST00000637100 EPN1Q9Y6I3 576 aaPredicted RBP15.73■□□□□ 0.11
CLN3-255ENST00000637100 DIDO1Q9BTC0 2240 aaKnown RBP15.73■□□□□ 0.11
CLN3-255ENST00000637100 PDZD2O15018 2839 aa15.72■□□□□ 0.11
CLN3-255ENST00000637100 CCDC78A2IDD5 438 aa15.72■□□□□ 0.11
CLN3-255ENST00000637100 RASGRF2O14827 1237 aa15.72■□□□□ 0.11
CLN3-255ENST00000637100 HNRNPRO43390 633 aaKnown RBP15.72■□□□□ 0.11
CLN3-255ENST00000637100 CTSVO60911 334 aa15.72■□□□□ 0.11
CLN3-255ENST00000637100 KLHL18O94889 574 aa15.72■□□□□ 0.11
CLN3-255ENST00000637100 RPN2P04844 631 aa15.72■□□□□ 0.11
CLN3-255ENST00000637100 AOAHP28039 575 aa15.72■□□□□ 0.11
CLN3-255ENST00000637100 CYLC1P35663 651 aaPredicted RBP15.72■□□□□ 0.11
CLN3-255ENST00000637100 CDH17Q12864 832 aa15.72■□□□□ 0.11
CLN3-255ENST00000637100 TSTD2Q5T7W7 516 aa15.72■□□□□ 0.11
CLN3-255ENST00000637100 ISLR2Q6UXK2 745 aa15.72■□□□□ 0.11
CLN3-255ENST00000637100 ZDHHC19Q8WVZ1 309 aaPredicted RBP15.72■□□□□ 0.11
CLN3-255ENST00000637100 PSMF1Q92530 271 aa15.72■□□□□ 0.11
CLN3-255ENST00000637100 HDAC10Q969S8 669 aa15.72■□□□□ 0.11
CLN3-255ENST00000637100 VPS50Q96JG6 964 aa15.72■□□□□ 0.11
CLN3-255ENST00000637100 CTSFQ9UBX1 484 aa15.72■□□□□ 0.11
CLN3-255ENST00000637100 REXO2Q9Y3B8 237 aaKnown RBP15.72■□□□□ 0.11
CLN3-255ENST00000637100 HEATR9A2RTY3 570 aa15.71■□□□□ 0.11
CLN3-255ENST00000637100 ALOX12BO75342 701 aa15.71■□□□□ 0.11
CLN3-255ENST00000637100 MED26O95402 600 aa15.71■□□□□ 0.11
CLN3-255ENST00000637100 GOT2P00505 430 aaKnown RBP15.71■□□□□ 0.11
CLN3-255ENST00000637100 HPP00738 406 aa15.71■□□□□ 0.11
CLN3-255ENST00000637100 PTMSP20962 102 aa15.71■□□□□ 0.11
CLN3-255ENST00000637100 MCM3P25205 808 aa15.71■□□□□ 0.11
CLN3-255ENST00000637100 SOX11P35716 441 aa15.71■□□□□ 0.11
CLN3-255ENST00000637100 GRIA3P42263 894 aa15.71■□□□□ 0.11
CLN3-255ENST00000637100 TDGF1P3P51864 188 aa15.71■□□□□ 0.11
CLN3-255ENST00000637100 EMP3P54852 163 aa15.71■□□□□ 0.11
CLN3-255ENST00000637100 SEMA3AQ14563 771 aa15.71■□□□□ 0.11
CLN3-255ENST00000637100 SYTL3Q4VX76 610 aa15.71■□□□□ 0.11
CLN3-255ENST00000637100 AFTPHQ6ULP2 937 aa15.71■□□□□ 0.11
CLN3-255ENST00000637100 PARP9Q8IXQ6 854 aa15.71■□□□□ 0.11
CLN3-255ENST00000637100 OR52K1Q8NGK4 314 aa15.71■□□□□ 0.11
CLN3-255ENST00000637100 OR4L1Q8NH43 312 aa15.71■□□□□ 0.11
CLN3-255ENST00000637100 LKAAEAR1Q8TD35 194 aa15.71■□□□□ 0.11
CLN3-255ENST00000637100 ZNF778Q96MU6 729 aa15.71■□□□□ 0.11
CLN3-255ENST00000637100 ALS2CR12Q96Q35 445 aa15.71■□□□□ 0.11
CLN3-255ENST00000637100 TTC1Q99614 292 aa15.71■□□□□ 0.11
CLN3-255ENST00000637100 LACRTQ9GZZ8 138 aa15.71■□□□□ 0.11
CLN3-255ENST00000637100 EPS8L2Q9H6S3 715 aa15.71■□□□□ 0.11
CLN3-255ENST00000637100 PIH1D1Q9NWS0 290 aaKnown RBP15.71■□□□□ 0.11
CLN3-255ENST00000637100 IMPACTQ9P2X3 320 aa15.71■□□□□ 0.11
CLN3-255ENST00000637100 OSGIN2Q9Y236 505 aa15.71■□□□□ 0.11
CLN3-255ENST00000637100 R3HDM2Q9Y2K5 976 aaKnown RBP15.71■□□□□ 0.11
CLN3-255ENST00000637100 FBN2P35556 2912 aa15.71■□□□□ 0.1
CLN3-255ENST00000637100 A0A1B0GUH1 482 aa15.7■□□□□ 0.1
CLN3-255ENST00000637100 GRID2IPA4D2P6 1211 aa15.7■□□□□ 0.1
CLN3-255ENST00000637100 PRF1P14222 555 aa15.7■□□□□ 0.1
CLN3-255ENST00000637100 ADRA1DP25100 572 aa15.7■□□□□ 0.1
CLN3-255ENST00000637100 STIP1P31948 543 aaKnown RBP15.7■□□□□ 0.1
CLN3-255ENST00000637100 CARSP49589 748 aaKnown RBP15.7■□□□□ 0.1
CLN3-255ENST00000637100 HSPA14Q0VDF9 509 aa15.7■□□□□ 0.1
CLN3-255ENST00000637100 CDC16Q13042 620 aa15.7■□□□□ 0.1
CLN3-255ENST00000637100 CCDC38Q502W7 563 aa15.7■□□□□ 0.1
CLN3-255ENST00000637100 PRMT9Q6P2P2 845 aa15.7■□□□□ 0.1
CLN3-255ENST00000637100 NLRP9Q7RTR0 991 aa15.7■□□□□ 0.1
CLN3-255ENST00000637100 OR2A1Q8NGT9 310 aa15.7■□□□□ 0.1
CLN3-255ENST00000637100 HAS2Q92819 552 aa15.7■□□□□ 0.1
CLN3-255ENST00000637100 THOC3Q96J01 351 aaKnown RBP15.7■□□□□ 0.1
CLN3-255ENST00000637100 IL17FQ96PD4 163 aa15.7■□□□□ 0.1
CLN3-255ENST00000637100 PANX2Q96RD6 677 aa15.7■□□□□ 0.1
CLN3-255ENST00000637100 MESP1Q9BRJ9 268 aa15.7■□□□□ 0.1
CLN3-255ENST00000637100 TMEM121Q9BTD3 319 aa15.7■□□□□ 0.1
CLN3-255ENST00000637100 RAB11FIP5Q9BXF6 653 aa15.7■□□□□ 0.1
CLN3-255ENST00000637100 P2RY12Q9H244 342 aa15.7■□□□□ 0.1
CLN3-255ENST00000637100 SLC2A6Q9UGQ3 507 aa15.7■□□□□ 0.1
CLN3-255ENST00000637100 ZGRF1Q86YA3 2104 aa15.7■□□□□ 0.1
CLN3-255ENST00000637100 A0A1W2PPV9 198 aa15.69■□□□□ 0.1
CLN3-255ENST00000637100 GOLGA6L9A6NEM1 432 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms