RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 RNF165Q6ZSG1 346 aa17.86■□□□□ 0.45
CLN3-254ENST00000637050 WDR5BQ86VZ2 330 aa17.86■□□□□ 0.45
CLN3-254ENST00000637050 DDIASQ8IXT1 998 aa17.86■□□□□ 0.45
CLN3-254ENST00000637050 CAMK1GQ96NX5 476 aa17.86■□□□□ 0.45
CLN3-254ENST00000637050 IL17FQ96PD4 163 aa17.86■□□□□ 0.45
CLN3-254ENST00000637050 CCDC106Q9BWC9 280 aa17.86■□□□□ 0.45
CLN3-254ENST00000637050 TCEAL2Q9H3H9 227 aaPredicted RBP17.86■□□□□ 0.45
CLN3-254ENST00000637050 PFDN4Q9NQP4 134 aa17.86■□□□□ 0.45
CLN3-254ENST00000637050 GPRC5BQ9NZH0 403 aa17.86■□□□□ 0.45
CLN3-254ENST00000637050 LNPEPQ9UIQ6 1025 aa17.86■□□□□ 0.45
CLN3-254ENST00000637050 TMEM221A6NGB7 291 aa17.85■□□□□ 0.45
CLN3-254ENST00000637050 M0R296 226 aa17.85■□□□□ 0.45
CLN3-254ENST00000637050 WFS1O76024 890 aa17.85■□□□□ 0.45
CLN3-254ENST00000637050 LINC00032P0C843 101 aa17.85■□□□□ 0.45
CLN3-254ENST00000637050 HMOX2P30519 316 aa17.85■□□□□ 0.45
CLN3-254ENST00000637050 BLKP51451 505 aa17.85■□□□□ 0.45
CLN3-254ENST00000637050 FASTKQ14296 549 aaKnown RBP17.85■□□□□ 0.45
CLN3-254ENST00000637050 SPRED3Q2MJR0 410 aa17.85■□□□□ 0.45
CLN3-254ENST00000637050 XKR7Q5GH72 579 aa17.85■□□□□ 0.45
CLN3-254ENST00000637050 TCHHL1Q5QJ38 904 aaPredicted RBP17.85■□□□□ 0.45
CLN3-254ENST00000637050 PHACTR4Q8IZ21 702 aa17.85■□□□□ 0.45
CLN3-254ENST00000637050 MAGEB10Q96LZ2 347 aaPredicted RBP17.85■□□□□ 0.45
CLN3-254ENST00000637050 MIR1-1HGQ9H1L0 117 aa17.85■□□□□ 0.45
CLN3-254ENST00000637050 CCDC177Q9NQR7 707 aaPredicted RBP17.85■□□□□ 0.45
CLN3-254ENST00000637050 ARMCX1Q9P291 453 aa17.85■□□□□ 0.45
CLN3-254ENST00000637050 CEP192Q8TEP8 1941 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 ATP6AP2A0A1C7CYW4 349 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 ZNF839A8K0R7 811 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 CAPN14A8MX76 684 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 TLR4O00206 839 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 LAMTOR5O43504 91 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 VPS4BO75351 444 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 ATP6AP2O75787 350 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 F3P13726 295 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 NPPBP16860 134 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 NCF2P19878 526 aaPredicted RBP17.84■□□□□ 0.45
CLN3-254ENST00000637050 CCND1P24385 295 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 HTR6P50406 440 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 CHIT1Q13231 466 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 E2F2Q14209 437 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 KRT72Q14CN4 511 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 TCEA2Q15560 299 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 ZNF542PQ5EBM4 170 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 LIPJQ5W064 366 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 LAYNQ6UX15 382 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 CHSY3Q70JA7 882 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 LMNTD1Q8N9Z9 388 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 SETD7Q8WTS6 366 aaKnown RBP17.84■□□□□ 0.45
CLN3-254ENST00000637050 MIPEPQ99797 713 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 GSDMCQ9BYG8 508 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 ZNF385DQ9H6B1 395 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 CAAP1Q9H8G2 361 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 AKTIPQ9H8T0 292 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 KCNE2Q9Y6J6 123 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 TECTAO75443 2155 aa17.84■□□□□ 0.45
CLN3-254ENST00000637050 E7EQ34 232 aa17.83■□□□□ 0.45
CLN3-254ENST00000637050 CLGNO14967 610 aa17.83■□□□□ 0.45
CLN3-254ENST00000637050 GNAZP19086 355 aa17.83■□□□□ 0.45
CLN3-254ENST00000637050 CASP2P42575 452 aa17.83■□□□□ 0.45
CLN3-254ENST00000637050 IRF8Q02556 426 aa17.83■□□□□ 0.45
CLN3-254ENST00000637050 UBAP2LQ14157 1087 aaKnown RBP17.83■□□□□ 0.45
CLN3-254ENST00000637050 TMEM198Q66K66 360 aa17.83■□□□□ 0.45
CLN3-254ENST00000637050 MAML2Q8IZL2 1156 aaPredicted RBP17.83■□□□□ 0.45
CLN3-254ENST00000637050 RAB11FIP5Q9BXF6 653 aa17.83■□□□□ 0.45
CLN3-254ENST00000637050 ZNF624Q9P2J8 865 aaPredicted RBP17.83■□□□□ 0.45
CLN3-254ENST00000637050 SLC12A4Q9UP95 1085 aa17.83■□□□□ 0.45
CLN3-254ENST00000637050 COLEC10Q9Y6Z7 277 aa17.83■□□□□ 0.45
CLN3-254ENST00000637050 MANBAO00462 879 aa17.83■□□□□ 0.44
CLN3-254ENST00000637050 FFAR3O14843 346 aa17.83■□□□□ 0.44
CLN3-254ENST00000637050 GPR42O15529 346 aa17.83■□□□□ 0.44
CLN3-254ENST00000637050 PRR35P0CG20 571 aa17.83■□□□□ 0.44
CLN3-254ENST00000637050 JUPP14923 745 aa17.83■□□□□ 0.44
CLN3-254ENST00000637050 NDUFS1P28331 727 aa17.83■□□□□ 0.44
CLN3-254ENST00000637050 KRT33BQ14525 404 aa17.83■□□□□ 0.44
CLN3-254ENST00000637050 ABRAXAS2Q15018 415 aa17.83■□□□□ 0.44
CLN3-254ENST00000637050 TBCCQ15814 346 aa17.83■□□□□ 0.44
CLN3-254ENST00000637050 CPSF6Q16630 551 aaKnown RBP eCLIP17.83■□□□□ 0.44
CLN3-254ENST00000637050 XKR6Q5GH73 641 aa17.83■□□□□ 0.44
CLN3-254ENST00000637050 WDR45BQ5MNZ6 344 aa17.83■□□□□ 0.44
CLN3-254ENST00000637050 IL27RAQ6UWB1 636 aa17.83■□□□□ 0.44
CLN3-254ENST00000637050 SCIMPQ6UWF3 145 aa17.83■□□□□ 0.44
CLN3-254ENST00000637050 SUSD1Q6UWL2 747 aa17.83■□□□□ 0.44
CLN3-254ENST00000637050 LCTLQ6UWM7 567 aa17.83■□□□□ 0.44
CLN3-254ENST00000637050 SLCO4C1Q6ZQN7 724 aa17.83■□□□□ 0.44
CLN3-254ENST00000637050 LONP2Q86WA8 852 aa17.83■□□□□ 0.44
CLN3-254ENST00000637050 MYLK4Q86YV6 388 aaPredicted RBP17.83■□□□□ 0.44
CLN3-254ENST00000637050 TREML1Q86YW5 311 aa17.83■□□□□ 0.44
CLN3-254ENST00000637050 C1orf210Q8IVY1 113 aa17.83■□□□□ 0.44
CLN3-254ENST00000637050 RAB42Q8N4Z0 105 aa17.83■□□□□ 0.44
CLN3-254ENST00000637050 CPSF7Q8N684 471 aaKnown RBP17.83■□□□□ 0.44
CLN3-254ENST00000637050 HMGCLL1Q8TB92 370 aa17.83■□□□□ 0.44
CLN3-254ENST00000637050 USP7Q93009 1102 aa17.83■□□□□ 0.44
CLN3-254ENST00000637050 NEIL2Q969S2 332 aa17.83■□□□□ 0.44
CLN3-254ENST00000637050 NRTNQ99748 197 aa17.83■□□□□ 0.44
CLN3-254ENST00000637050 KIR3DX1Q9H7L2 352 aa17.83■□□□□ 0.44
CLN3-254ENST00000637050 PRR5-ARHGAP8B1AHC4 643 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 ULK1O75385 1050 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 KRT6AP02538 564 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 CSF2P04141 144 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 KRT6BP04259 564 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms