RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 FGD2Q7Z6J4 655 aa13.85□□□□□ -0.19
CLN3-249ENST00000636685 SIAH3Q8IW03 269 aa13.85□□□□□ -0.19
CLN3-249ENST00000636685 MARVELD2Q8N4S9 558 aa13.85□□□□□ -0.19
CLN3-249ENST00000636685 LRRN4CLQ8ND94 238 aa13.85□□□□□ -0.19
CLN3-249ENST00000636685 FAF2Q96CS3 445 aa13.85□□□□□ -0.19
CLN3-249ENST00000636685 DCUN1D1Q96GG9 259 aa13.85□□□□□ -0.19
CLN3-249ENST00000636685 ZNF830Q96NB3 372 aaPredicted RBP13.85□□□□□ -0.19
CLN3-249ENST00000636685 TRIM51Q9BSJ1 452 aa13.85□□□□□ -0.19
CLN3-249ENST00000636685 ASB8Q9H765 288 aa13.85□□□□□ -0.19
CLN3-249ENST00000636685 KLHL1Q9NR64 748 aa13.85□□□□□ -0.19
CLN3-249ENST00000636685 TDRKHQ9Y2W6 561 aaKnown RBP13.85□□□□□ -0.19
CLN3-249ENST00000636685 HRNRQ86YZ3 2850 aaPredicted RBP13.85□□□□□ -0.19
CLN3-249ENST00000636685 LOC285095A0A1B0GVY8 99 aa13.84□□□□□ -0.19
CLN3-249ENST00000636685 DDX3XO00571 662 aaKnown RBP eCLIP13.84□□□□□ -0.19
CLN3-249ENST00000636685 PRRG2O14669 202 aa13.84□□□□□ -0.19
CLN3-249ENST00000636685 STX7O15400 261 aaKnown RBP13.84□□□□□ -0.19
CLN3-249ENST00000636685 MYBL1P10243 752 aa13.84□□□□□ -0.19
CLN3-249ENST00000636685 DNASE1P24855 282 aa13.84□□□□□ -0.19
CLN3-249ENST00000636685 ADSLP30566 484 aaPredicted RBP13.84□□□□□ -0.19
CLN3-249ENST00000636685 EMP2P54851 167 aa13.84□□□□□ -0.19
CLN3-249ENST00000636685 WNT3AP56704 352 aa13.84□□□□□ -0.19
CLN3-249ENST00000636685 YOD1Q5VVQ6 348 aaPredicted RBP13.84□□□□□ -0.19
CLN3-249ENST00000636685 GHDCQ8N2G8 530 aa13.84□□□□□ -0.19
CLN3-249ENST00000636685 TTC29Q8NA56 475 aaPredicted RBP13.84□□□□□ -0.19
CLN3-249ENST00000636685 WFDC11Q8NEX6 87 aa13.84□□□□□ -0.19
CLN3-249ENST00000636685 LILRB4Q8NHJ6 448 aa13.84□□□□□ -0.19
CLN3-249ENST00000636685 NUDT8Q8WV74 236 aa13.84□□□□□ -0.19
CLN3-249ENST00000636685 C18orf12Q96KH6 178 aa13.84□□□□□ -0.19
CLN3-249ENST00000636685 FRMD6Q96NE9 622 aa13.84□□□□□ -0.19
CLN3-249ENST00000636685 SIGLEC12Q96PQ1 595 aa13.84□□□□□ -0.19
CLN3-249ENST00000636685 ALPK1Q96QP1 1244 aa13.84□□□□□ -0.19
CLN3-249ENST00000636685 HAUS4Q9H6D7 363 aa13.84□□□□□ -0.19
CLN3-249ENST00000636685 ZNF304Q9HCX3 659 aa13.84□□□□□ -0.19
CLN3-249ENST00000636685 RIC8BQ9NVN3 520 aa13.84□□□□□ -0.19
CLN3-249ENST00000636685 IL1RAPL1Q9NZN1 696 aa13.84□□□□□ -0.19
CLN3-249ENST00000636685 OR6C2Q9NZP2 312 aa13.84□□□□□ -0.19
CLN3-249ENST00000636685 HACD3Q9P035 362 aa13.84□□□□□ -0.19
CLN3-249ENST00000636685 ZNF282Q9UDV7 671 aaPredicted RBP13.84□□□□□ -0.19
CLN3-249ENST00000636685 IP6K2Q9UHH9 426 aa13.84□□□□□ -0.19
CLN3-249ENST00000636685 ANAPC7Q9UJX3 599 aa13.84□□□□□ -0.19
CLN3-249ENST00000636685 RNF6Q9Y252 685 aa13.84□□□□□ -0.19
CLN3-249ENST00000636685 ASB1Q9Y576 335 aa13.84□□□□□ -0.19
CLN3-249ENST00000636685 HEY1Q9Y5J3 304 aa13.84□□□□□ -0.19
CLN3-249ENST00000636685 TLN2Q9Y4G6 2542 aa13.84□□□□□ -0.19
CLN3-249ENST00000636685 A0A1W2PQ72 361 aa13.83□□□□□ -0.2
CLN3-249ENST00000636685 ASPDHA6ND91 283 aa13.83□□□□□ -0.2
CLN3-249ENST00000636685 CTAG2O75638 210 aa13.83□□□□□ -0.2
CLN3-249ENST00000636685 CXCR2P25025 360 aa13.83□□□□□ -0.2
CLN3-249ENST00000636685 UBXN1Q04323 297 aa13.83□□□□□ -0.2
CLN3-249ENST00000636685 HADHQ16836 314 aaKnown RBP13.83□□□□□ -0.2
CLN3-249ENST00000636685 KDELC1Q6UW63 502 aa13.83□□□□□ -0.2
CLN3-249ENST00000636685 EID3Q8N140 333 aa13.83□□□□□ -0.2
CLN3-249ENST00000636685 ASB5Q8WWX0 329 aa13.83□□□□□ -0.2
CLN3-249ENST00000636685 TRIM11Q96F44 468 aa13.83□□□□□ -0.2
CLN3-249ENST00000636685 POLDIP3Q9BY77 421 aaKnown RBP13.83□□□□□ -0.2
CLN3-249ENST00000636685 FAM96AQ9H5X1 160 aa13.83□□□□□ -0.2
CLN3-249ENST00000636685 KCNJ16Q9NPI9 418 aa13.83□□□□□ -0.2
CLN3-249ENST00000636685 STOX2Q9P2F5 926 aaPredicted RBP13.83□□□□□ -0.2
CLN3-249ENST00000636685 FKBPLQ9UIM3 349 aa13.83□□□□□ -0.2
CLN3-249ENST00000636685 CRLS1Q9UJA2 301 aa13.83□□□□□ -0.2
CLN3-249ENST00000636685 DNAJC13O75165 2243 aa13.83□□□□□ -0.2
CLN3-249ENST00000636685 PHF3Q92576 2039 aaKnown RBP13.83□□□□□ -0.2
CLN3-249ENST00000636685 A0A0A6YYK5 440 aaPredicted RBP13.82□□□□□ -0.2
CLN3-249ENST00000636685 A8MUI8 341 aa13.82□□□□□ -0.2
CLN3-249ENST00000636685 IDSB3KWA1 339 aa13.82□□□□□ -0.2
CLN3-249ENST00000636685 FFAR3O14843 346 aa13.82□□□□□ -0.2
CLN3-249ENST00000636685 GPR42O15529 346 aa13.82□□□□□ -0.2
CLN3-249ENST00000636685 SRP72O76094 671 aaKnown RBP13.82□□□□□ -0.2
CLN3-249ENST00000636685 INHBBP09529 407 aa13.82□□□□□ -0.2
CLN3-249ENST00000636685 RALBP11234 206 aa13.82□□□□□ -0.2
CLN3-249ENST00000636685 ATP1B2P14415 290 aaPredicted RBP13.82□□□□□ -0.2
CLN3-249ENST00000636685 CDK11BP21127 795 aaKnown RBP13.82□□□□□ -0.2
CLN3-249ENST00000636685 DGKQP52824 942 aa13.82□□□□□ -0.2
CLN3-249ENST00000636685 KIR2DS3Q14952 304 aa13.82□□□□□ -0.2
CLN3-249ENST00000636685 PDK2Q15119 407 aa13.82□□□□□ -0.2
CLN3-249ENST00000636685 TCTE1Q5JU00 501 aa13.82□□□□□ -0.2
CLN3-249ENST00000636685 FCRLBQ6BAA4 426 aa13.82□□□□□ -0.2
CLN3-249ENST00000636685 BEST3Q8N1M1 668 aa13.82□□□□□ -0.2
CLN3-249ENST00000636685 LMNTD1Q8N9Z9 388 aa13.82□□□□□ -0.2
CLN3-249ENST00000636685 MDS2Q8NDY4 140 aa13.82□□□□□ -0.2
CLN3-249ENST00000636685 HDAC10Q969S8 669 aa13.82□□□□□ -0.2
CLN3-249ENST00000636685 ZNF285Q96NJ3 590 aa13.82□□□□□ -0.2
CLN3-249ENST00000636685 SELENOSQ9BQE4 189 aa13.82□□□□□ -0.2
CLN3-249ENST00000636685 ANKRD10Q9NXR5 420 aa13.82□□□□□ -0.2
CLN3-249ENST00000636685 LRFN1Q9P244 771 aa13.82□□□□□ -0.2
CLN3-249ENST00000636685 FAM153AQ9UHL3 310 aa13.82□□□□□ -0.2
CLN3-249ENST00000636685 ASF1AQ9Y294 204 aa13.82□□□□□ -0.2
CLN3-249ENST00000636685 ARL5AQ9Y689 179 aa13.82□□□□□ -0.2
CLN3-249ENST00000636685 FITM1A5D6W6 292 aa13.81□□□□□ -0.2
CLN3-249ENST00000636685 LGALS16A8MUM7 142 aa13.81□□□□□ -0.2
CLN3-249ENST00000636685 HEXAP06865 529 aa13.81□□□□□ -0.2
CLN3-249ENST00000636685 EEF1DP29692 281 aaKnown RBP13.81□□□□□ -0.2
CLN3-249ENST00000636685 CHRNB4P30926 498 aa13.81□□□□□ -0.2
CLN3-249ENST00000636685 CD68P34810 354 aaPredicted RBP13.81□□□□□ -0.2
CLN3-249ENST00000636685 VSX2P58304 361 aaPredicted RBP13.81□□□□□ -0.2
CLN3-249ENST00000636685 RPA4Q13156 261 aa13.81□□□□□ -0.2
CLN3-249ENST00000636685 TUBA3CQ13748 450 aa13.81□□□□□ -0.2
CLN3-249ENST00000636685 FAM214AQ32MH5 1076 aa13.81□□□□□ -0.2
CLN3-249ENST00000636685 TEX44Q53QW1 395 aa13.81□□□□□ -0.2
CLN3-249ENST00000636685 ZNF449Q6P9G9 518 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms