RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 GPR19Q15760 415 aa19.98■□□□□ 0.79
CLN3-240ENST00000631023 KBTBD12Q3ZCT8 623 aa19.98■□□□□ 0.79
CLN3-240ENST00000631023 TRIM73Q86UV7 250 aa19.98■□□□□ 0.79
CLN3-240ENST00000631023 PKP4Q99569 1192 aa19.98■□□□□ 0.79
CLN3-240ENST00000631023 KLHL25Q9H0H3 589 aa19.98■□□□□ 0.79
CLN3-240ENST00000631023 MDC1Q14676 2089 aaKnown RBP19.98■□□□□ 0.79
CLN3-240ENST00000631023 SLC16A5O15375 505 aa19.97■□□□□ 0.79
CLN3-240ENST00000631023 ERGP11308 486 aa19.97■□□□□ 0.79
CLN3-240ENST00000631023 POU4F1Q01851 419 aa19.97■□□□□ 0.79
CLN3-240ENST00000631023 SP140Q13342 867 aa19.97■□□□□ 0.79
CLN3-240ENST00000631023 NAB1Q13506 487 aa19.97■□□□□ 0.79
CLN3-240ENST00000631023 GRTP1Q5TC63 336 aa19.97■□□□□ 0.79
CLN3-240ENST00000631023 C19orf48Q6RUI8 117 aa19.97■□□□□ 0.79
CLN3-240ENST00000631023 NLGN4XQ8N0W4 816 aa19.97■□□□□ 0.79
CLN3-240ENST00000631023 IL22RA1Q8N6P7 574 aa19.97■□□□□ 0.79
CLN3-240ENST00000631023 PPM1NQ8N819 430 aa19.97■□□□□ 0.79
CLN3-240ENST00000631023 NLGN4YQ8NFZ3 816 aaPredicted RBP19.97■□□□□ 0.79
CLN3-240ENST00000631023 SMPDL3AQ92484 453 aa19.97■□□□□ 0.79
CLN3-240ENST00000631023 N4BP2L2Q92802 583 aaPredicted RBP19.97■□□□□ 0.79
CLN3-240ENST00000631023 PDLIM5Q96HC4 596 aaKnown RBP19.97■□□□□ 0.79
CLN3-240ENST00000631023 CCNL2Q96S94 520 aaPredicted RBP19.97■□□□□ 0.79
CLN3-240ENST00000631023 MCMBPQ9BTE3 642 aa19.97■□□□□ 0.79
CLN3-240ENST00000631023 SPRY4Q9C004 299 aa19.97■□□□□ 0.79
CLN3-240ENST00000631023 L2HGDHQ9H9P8 463 aa19.97■□□□□ 0.79
CLN3-240ENST00000631023 PARVBQ9HBI1 364 aa19.97■□□□□ 0.79
CLN3-240ENST00000631023 SERTAD3Q9UJW9 196 aa19.97■□□□□ 0.79
CLN3-240ENST00000631023 ZFHX4Q86UP3 3567 aa19.97■□□□□ 0.79
CLN3-240ENST00000631023 KRT87PA6NCN2 255 aa19.96■□□□□ 0.79
CLN3-240ENST00000631023 PABPN1LA6NDY0 278 aaKnown RBP19.96■□□□□ 0.79
CLN3-240ENST00000631023 PRICKLE3O43900 615 aaPredicted RBP19.96■□□□□ 0.79
CLN3-240ENST00000631023 RAD1O60671 282 aa19.96■□□□□ 0.79
CLN3-240ENST00000631023 PNLIPRP1P54315 467 aa19.96■□□□□ 0.79
CLN3-240ENST00000631023 TMPRSS3P57727 454 aa19.96■□□□□ 0.79
CLN3-240ENST00000631023 MANEAQ5SRI9 462 aa19.96■□□□□ 0.79
CLN3-240ENST00000631023 CACNA2D3Q8IZS8 1091 aa19.96■□□□□ 0.79
CLN3-240ENST00000631023 NKAPQ8N5F7 415 aaKnown RBP19.96■□□□□ 0.79
CLN3-240ENST00000631023 ESX1Q8N693 406 aa19.96■□□□□ 0.79
CLN3-240ENST00000631023 LMNTD1Q8N9Z9 388 aa19.96■□□□□ 0.79
CLN3-240ENST00000631023 NKD1Q969G9 470 aa19.96■□□□□ 0.79
CLN3-240ENST00000631023 ZNF501Q96CX3 271 aaPredicted RBP19.96■□□□□ 0.79
CLN3-240ENST00000631023 TSPAN17Q96FV3 270 aa19.96■□□□□ 0.79
CLN3-240ENST00000631023 RBBP8Q99708 897 aa19.96■□□□□ 0.79
CLN3-240ENST00000631023 SLC12A9Q9BXP2 914 aa19.96■□□□□ 0.79
CLN3-240ENST00000631023 TRIM54Q9BYV2 358 aa19.96■□□□□ 0.79
CLN3-240ENST00000631023 SSUH2Q9Y2M2 353 aa19.96■□□□□ 0.79
CLN3-240ENST00000631023 SLC16A8O95907 504 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 MT-ND3P03897 115 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 HIST1H2AGP0C0S8 130 aaPredicted RBP19.95■□□□□ 0.78
CLN3-240ENST00000631023 RHOXF2BP0C7M4 288 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 HIST1H2ADP20671 130 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 SPRP35270 261 aaPredicted RBP19.95■□□□□ 0.78
CLN3-240ENST00000631023 TAS2R39P59534 338 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 MAP7Q14244 749 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 SPNS2Q8IVW8 549 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 SYTL1Q8IYJ3 562 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 ZUFSPQ96AP4 578 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 HIST1H2AHQ96KK5 128 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 CCDC138Q96M89 665 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 HIST1H2AJQ99878 128 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 RHOXF2Q9BQY4 288 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 H2AFJQ9BTM1 129 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 POPDC3Q9HBV1 291 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 CFAP47Q6ZTR5 3102 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 TMEM150CB9EJG8 249 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 KIAA0754O94854 1291 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 TSPAN12O95859 305 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 DLGAP3O95886 979 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 C1QAP02745 245 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 ZNF37AP17032 561 aaPredicted RBP19.95■□□□□ 0.78
CLN3-240ENST00000631023 RPA3P35244 121 aaPredicted RBP19.95■□□□□ 0.78
CLN3-240ENST00000631023 TSTA3Q13630 321 aaPredicted RBP19.95■□□□□ 0.78
CLN3-240ENST00000631023 FASTKQ14296 549 aaKnown RBP19.95■□□□□ 0.78
CLN3-240ENST00000631023 NAA25Q14CX7 972 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 COL28A1Q2UY09 1125 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 PWWP2BQ6NUJ5 590 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 C6orf15Q6UXA7 325 aaPredicted RBP19.95■□□□□ 0.78
CLN3-240ENST00000631023 CDHR3Q6ZTQ4 885 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 TMEM126BQ8IUX1 230 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 ANKRD7Q92527 254 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 NINJ2Q9NZG7 142 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 PDE10AQ9Y233 779 aa19.95■□□□□ 0.78
CLN3-240ENST00000631023 MTO1Q9Y2Z2 717 aaKnown RBP19.95■□□□□ 0.78
CLN3-240ENST00000631023 TARM1B6A8C7 271 aa19.94■□□□□ 0.78
CLN3-240ENST00000631023 ZNF500O60304 480 aaPredicted RBP19.94■□□□□ 0.78
CLN3-240ENST00000631023 SCRG1O75711 98 aa19.94■□□□□ 0.78
CLN3-240ENST00000631023 CCNYL3P0C7X3 344 aa19.94■□□□□ 0.78
CLN3-240ENST00000631023 ZNF28P17035 718 aa19.94■□□□□ 0.78
CLN3-240ENST00000631023 MAGP20916 626 aa19.94■□□□□ 0.78
CLN3-240ENST00000631023 ECHS1P30084 290 aa19.94■□□□□ 0.78
CLN3-240ENST00000631023 CMPK1P30085 196 aa19.94■□□□□ 0.78
CLN3-240ENST00000631023 PGGT1BP53609 377 aa19.94■□□□□ 0.78
CLN3-240ENST00000631023 ITGA1P56199 1179 aa19.94■□□□□ 0.78
CLN3-240ENST00000631023 USP10Q14694 798 aaKnown RBP19.94■□□□□ 0.78
CLN3-240ENST00000631023 ZIC1Q15915 447 aa19.94■□□□□ 0.78
CLN3-240ENST00000631023 CCDC81Q6ZN84 652 aa19.94■□□□□ 0.78
CLN3-240ENST00000631023 FAM20CQ8IXL6 584 aa19.94■□□□□ 0.78
CLN3-240ENST00000631023 OR2L3Q8NG85 312 aa19.94■□□□□ 0.78
CLN3-240ENST00000631023 OR2A1Q8NGT9 310 aa19.94■□□□□ 0.78
CLN3-240ENST00000631023 ZNF480Q8WV37 535 aa19.94■□□□□ 0.78
CLN3-240ENST00000631023 DLG3Q92796 817 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms