RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 CALML4Q96GE6 196 aa2.18□□□□□ -2.06
SCN1A-208ENST00000625916 B3GALT6Q96L58 329 aa2.18□□□□□ -2.06
SCN1A-208ENST00000625916 SPAG5Q96R06 1193 aa2.18□□□□□ -2.06
SCN1A-208ENST00000625916 MAP3K3Q99759 626 aa2.18□□□□□ -2.06
SCN1A-208ENST00000625916 B3GAT1Q9P2W7 334 aa2.18□□□□□ -2.06
SCN1A-208ENST00000625916 STUB1Q9UNE7 303 aa2.18□□□□□ -2.06
SCN1A-208ENST00000625916 GRIP1Q9Y3R0 1128 aa2.18□□□□□ -2.06
SCN1A-208ENST00000625916 SESN1Q9Y6P5 492 aa2.18□□□□□ -2.06
SCN1A-208ENST00000625916 UMODL1Q5DID0 1318 aa2.17□□□□□ -2.06
SCN1A-208ENST00000625916 IGHV4-30-2A0A087WSY4 118 aa2.17□□□□□ -2.06
SCN1A-208ENST00000625916 A0A087WWV3 80 aa2.17□□□□□ -2.06
SCN1A-208ENST00000625916 SHISA7A6NL88 538 aa2.17□□□□□ -2.06
SCN1A-208ENST00000625916 C2orf81A6NN90 581 aa2.17□□□□□ -2.06
SCN1A-208ENST00000625916 IFRD1O00458 451 aaPredicted RBP2.17□□□□□ -2.06
SCN1A-208ENST00000625916 XRCC3O43542 346 aa2.17□□□□□ -2.06
SCN1A-208ENST00000625916 PEX14O75381 377 aa2.17□□□□□ -2.06
SCN1A-208ENST00000625916 WDPCPO95876 746 aa2.17□□□□□ -2.06
SCN1A-208ENST00000625916 FDPSP14324 419 aaKnown RBP2.17□□□□□ -2.06
SCN1A-208ENST00000625916 PRLRP16471 622 aa2.17□□□□□ -2.06
SCN1A-208ENST00000625916 PON1P27169 355 aa2.17□□□□□ -2.06
SCN1A-208ENST00000625916 MNDAP41218 407 aa2.17□□□□□ -2.06
SCN1A-208ENST00000625916 PRAMEP78395 509 aa2.17□□□□□ -2.06
SCN1A-208ENST00000625916 TAF10Q12962 218 aa2.17□□□□□ -2.06
SCN1A-208ENST00000625916 CDH18Q13634 790 aa2.17□□□□□ -2.06
SCN1A-208ENST00000625916 FAM189A2Q15884 450 aa2.17□□□□□ -2.06
SCN1A-208ENST00000625916 KHDRBS2Q5VWX1 349 aaKnown RBP2.17□□□□□ -2.06
SCN1A-208ENST00000625916 MCEMP1Q8IX19 187 aa2.17□□□□□ -2.06
SCN1A-208ENST00000625916 OR4N5Q8IXE1 308 aa2.17□□□□□ -2.06
SCN1A-208ENST00000625916 PAPD5Q8NDF8 572 aaKnown RBP2.17□□□□□ -2.06
SCN1A-208ENST00000625916 NPEPL1Q8NDH3 523 aa2.17□□□□□ -2.06
SCN1A-208ENST00000625916 RAD9AQ99638 391 aa2.17□□□□□ -2.06
SCN1A-208ENST00000625916 MGME1Q9BQP7 344 aa2.17□□□□□ -2.06
SCN1A-208ENST00000625916 NYXQ9GZU5 481 aa2.17□□□□□ -2.06
SCN1A-208ENST00000625916 HOXD1Q9GZZ0 328 aa2.17□□□□□ -2.06
SCN1A-208ENST00000625916 JMJD4Q9H9V9 463 aa2.17□□□□□ -2.06
SCN1A-208ENST00000625916 PA2G4Q9UQ80 394 aaKnown RBP2.17□□□□□ -2.06
SCN1A-208ENST00000625916 CRYL1Q9Y2S2 319 aa2.17□□□□□ -2.06
SCN1A-208ENST00000625916 H0YAE9 185 aa2.16□□□□□ -2.06
SCN1A-208ENST00000625916 ZNF354AO60765 605 aaPredicted RBP2.16□□□□□ -2.06
SCN1A-208ENST00000625916 HSPA8P11142 646 aaKnown RBP2.16□□□□□ -2.06
SCN1A-208ENST00000625916 RPL35AP18077 110 aaKnown RBP2.16□□□□□ -2.06
SCN1A-208ENST00000625916 CSTF2P33240 577 aaKnown RBP eCLIP2.16□□□□□ -2.06
SCN1A-208ENST00000625916 PPARGP37231 505 aaPredicted RBP2.16□□□□□ -2.06
SCN1A-208ENST00000625916 SLC35D3Q5M8T2 416 aa2.16□□□□□ -2.06
SCN1A-208ENST00000625916 SPDYCQ5MJ68 293 aa2.16□□□□□ -2.06
SCN1A-208ENST00000625916 OLFML2AQ68BL7 652 aa2.16□□□□□ -2.06
SCN1A-208ENST00000625916 KIAA0930Q6ICG6 404 aaPredicted RBP2.16□□□□□ -2.06
SCN1A-208ENST00000625916 KLHL35Q6PF15 583 aa2.16□□□□□ -2.06
SCN1A-208ENST00000625916 TMPRSS11FQ6ZWK6 438 aa2.16□□□□□ -2.06
SCN1A-208ENST00000625916 C9orf43Q8TAL5 461 aaPredicted RBP2.16□□□□□ -2.06
SCN1A-208ENST00000625916 CMTM3Q96MX0 182 aa2.16□□□□□ -2.06
SCN1A-208ENST00000625916 ATF6BQ99941 703 aa2.16□□□□□ -2.06
SCN1A-208ENST00000625916 OVOL2Q9BRP0 275 aa2.16□□□□□ -2.06
SCN1A-208ENST00000625916 UBAC1Q9BSL1 405 aa2.16□□□□□ -2.06
SCN1A-208ENST00000625916 ADNPQ9H2P0 1102 aa2.16□□□□□ -2.06
SCN1A-208ENST00000625916 SERINC1Q9NRX5 453 aa2.16□□□□□ -2.06
SCN1A-208ENST00000625916 SAGE1Q9NXZ1 904 aa2.16□□□□□ -2.06
SCN1A-208ENST00000625916 THAP10Q9P2Z0 257 aaPredicted RBP2.16□□□□□ -2.06
SCN1A-208ENST00000625916 TMEM129A0AVI4 362 aa2.15□□□□□ -2.07
SCN1A-208ENST00000625916 SRRM4A7MD48 611 aaKnown RBP2.15□□□□□ -2.07
SCN1A-208ENST00000625916 HEPACAM2A8MVW5 462 aa2.15□□□□□ -2.07
SCN1A-208ENST00000625916 A8MZ25 164 aa2.15□□□□□ -2.07
SCN1A-208ENST00000625916 SNAP91O60641 907 aa2.15□□□□□ -2.07
SCN1A-208ENST00000625916 CEACAM4O75871 244 aa2.15□□□□□ -2.07
SCN1A-208ENST00000625916 RARGP13631 454 aa2.15□□□□□ -2.07
SCN1A-208ENST00000625916 GABRA5P31644 462 aa2.15□□□□□ -2.07
SCN1A-208ENST00000625916 IRX4P78413 519 aa2.15□□□□□ -2.07
SCN1A-208ENST00000625916 NR1D2Q14995 579 aa2.15□□□□□ -2.07
SCN1A-208ENST00000625916 UGT3A1Q6NUS8 523 aa2.15□□□□□ -2.07
SCN1A-208ENST00000625916 TMEM154Q6P9G4 183 aa2.15□□□□□ -2.07
SCN1A-208ENST00000625916 FIGLAQ6QHK4 219 aa2.15□□□□□ -2.07
SCN1A-208ENST00000625916 PHC2Q8IXK0 858 aa2.15□□□□□ -2.07
SCN1A-208ENST00000625916 CEP57L1Q8IYX8 460 aa2.15□□□□□ -2.07
SCN1A-208ENST00000625916 POC5Q8NA72 575 aa2.15□□□□□ -2.07
SCN1A-208ENST00000625916 CEP295NLQ96MC4 621 aa2.15□□□□□ -2.07
SCN1A-208ENST00000625916 PARLQ9H300 379 aa2.15□□□□□ -2.07
SCN1A-208ENST00000625916 UBN1Q9NPG3 1134 aa2.15□□□□□ -2.07
SCN1A-208ENST00000625916 LUZP4Q9P127 313 aa2.15□□□□□ -2.07
SCN1A-208ENST00000625916 LARSQ9P2J5 1176 aaKnown RBP2.15□□□□□ -2.07
SCN1A-208ENST00000625916 CORO1CQ9ULV4 474 aaPredicted RBP2.15□□□□□ -2.07
SCN1A-208ENST00000625916 HMCN1Q96RW7 5635 aa2.14□□□□□ -2.07
SCN1A-208ENST00000625916 IGLV4-3A0A075B6K6 122 aa2.14□□□□□ -2.07
SCN1A-208ENST00000625916 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP2.14□□□□□ -2.07
SCN1A-208ENST00000625916 A0A1W2PR77 199 aa2.14□□□□□ -2.07
SCN1A-208ENST00000625916 MED24O75448 989 aa2.14□□□□□ -2.07
SCN1A-208ENST00000625916 RTN3O95197 1032 aaPredicted RBP2.14□□□□□ -2.07
SCN1A-208ENST00000625916 LY6G6DO95868 133 aa2.14□□□□□ -2.07
SCN1A-208ENST00000625916 VPREB1P12018 145 aa2.14□□□□□ -2.07
SCN1A-208ENST00000625916 JAK1P23458 1154 aa2.14□□□□□ -2.07
SCN1A-208ENST00000625916 PSMA4P25789 261 aaKnown RBP2.14□□□□□ -2.07
SCN1A-208ENST00000625916 CDK3Q00526 305 aa2.14□□□□□ -2.07
SCN1A-208ENST00000625916 DHODHQ02127 395 aa2.14□□□□□ -2.07
SCN1A-208ENST00000625916 LMOD3Q0VAK6 560 aa2.14□□□□□ -2.07
SCN1A-208ENST00000625916 ZNF177Q13360 481 aaPredicted RBP2.14□□□□□ -2.07
SCN1A-208ENST00000625916 TAB1Q15750 504 aa2.14□□□□□ -2.07
SCN1A-208ENST00000625916 TSTQ16762 297 aaKnown RBP2.14□□□□□ -2.07
SCN1A-208ENST00000625916 RNLSQ5VYX0 342 aa2.14□□□□□ -2.07
SCN1A-208ENST00000625916 TMCO3Q6UWJ1 677 aa2.14□□□□□ -2.07
SCN1A-208ENST00000625916 C11orf42Q8N5U0 333 aa2.14□□□□□ -2.07
SCN1A-208ENST00000625916 RTL3Q8N8U3 475 aaKnown RBP2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms