RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 NDUFS3O75489 264 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 STK17BO94768 372 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 PRB1P04280 392 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 SFTPCP11686 197 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 CHN1P15882 459 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 NELFEP18615 380 aaKnown RBP12.28□□□□□ -0.44
PNKP-217ENST00000625216 SAT1P21673 171 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 NSG1P42857 185 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 TTPAP49638 278 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 IRF9Q00978 393 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 TIAL1Q01085 375 aaKnown RBP eCLIP12.28□□□□□ -0.44
PNKP-217ENST00000625216 FOXM1Q08050 763 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 SRSF6Q13247 344 aaKnown RBP12.28□□□□□ -0.44
PNKP-217ENST00000625216 KRT33BQ14525 404 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 ITIH4Q14624 930 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 USP10Q14694 798 aaKnown RBP12.28□□□□□ -0.44
PNKP-217ENST00000625216 PLCL1Q15111 1095 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 RNF187Q5TA31 235 aaPredicted RBP12.28□□□□□ -0.44
PNKP-217ENST00000625216 LYPLAL1Q5VWZ2 237 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 FAM45BPQ6NSW5 357 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 IRGCQ6NXR0 463 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 BPHLQ86WA6 291 aaPredicted RBP12.28□□□□□ -0.44
PNKP-217ENST00000625216 CEP97Q8IW35 865 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 ZNF843Q8N446 348 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 ESX1Q8N693 406 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 ARFGAP2Q8N6H7 521 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 FAM45AQ8TCE6 357 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 ACMSDQ8TDX5 336 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 JPH3Q8WXH2 748 aaPredicted RBP12.28□□□□□ -0.44
PNKP-217ENST00000625216 ALKBH8Q96BT7 664 aaKnown RBP12.28□□□□□ -0.44
PNKP-217ENST00000625216 MED8Q96G25 268 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 FCRL4Q96PJ5 515 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 AARSD1Q9BTE6 412 aaKnown RBP12.28□□□□□ -0.44
PNKP-217ENST00000625216 P2RY12Q9H244 342 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 APMAPQ9HDC9 416 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 KCNK9Q9NPC2 374 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 HRASLS2Q9NWW9 162 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 SLC17A7Q9P2U7 560 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 MED16Q9Y2X0 877 aa12.28□□□□□ -0.44
PNKP-217ENST00000625216 ATMQ13315 3056 aa12.27□□□□□ -0.44
PNKP-217ENST00000625216 A0A096LPK6 155 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 OR5K3A6NET4 321 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 F8W8V4 182 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 MATN2O00339 956 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 KIF1CO43896 1103 aaKnown RBP12.27□□□□□ -0.45
PNKP-217ENST00000625216 C1QL1O75973 258 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 WISP3O95389 354 aaPredicted RBP12.27□□□□□ -0.45
PNKP-217ENST00000625216 DLGAP3O95886 979 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 C2P06681 752 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 SLC35E2BP0CK96 405 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 FGF5P12034 268 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 FDXRP22570 491 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 RPS3P23396 243 aaKnown RBP eCLIP12.27□□□□□ -0.45
PNKP-217ENST00000625216 TYK2P29597 1187 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 FMO4P31512 558 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 RPA3P35244 121 aaPredicted RBP12.27□□□□□ -0.45
PNKP-217ENST00000625216 PPARGP37231 505 aaPredicted RBP12.27□□□□□ -0.45
PNKP-217ENST00000625216 SEPHS1P49903 392 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 CDKN2DP55273 166 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 POU4F1Q01851 419 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 ACY1Q03154 408 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.27□□□□□ -0.45
PNKP-217ENST00000625216 ARMC6Q6NXE6 501 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 CERS6Q6ZMG9 384 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 FAM92BQ6ZTR7 304 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 OOSP2Q86WS3 158 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 CNPY4Q8N129 248 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 SPDYE1Q8NFV5 336 aaPredicted RBP12.27□□□□□ -0.45
PNKP-217ENST00000625216 LKAAEAR1Q8TD35 194 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 MGARPQ8TDB4 240 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 TCP10LQ8TDR4 215 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 DENND1AQ8TEH3 1009 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 NAT14Q8WUY8 206 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 SLC45A3Q96JT2 553 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 SLC41A2Q96JW4 573 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 BIRC8Q96P09 236 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 CATSPER2Q96P56 530 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 OR6C1Q96RD1 312 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 ARHGAP9Q9BRR9 750 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 SLC12A9Q9BXP2 914 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 VPS11Q9H270 941 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 CNOT10Q9H9A5 744 aaKnown RBP12.27□□□□□ -0.45
PNKP-217ENST00000625216 COG4Q9H9E3 785 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 PDE7BQ9NP56 450 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 MLXIPLQ9NP71 852 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 CFAP20Q9Y6A4 193 aaKnown RBP12.27□□□□□ -0.45
PNKP-217ENST00000625216 PRSS21Q9Y6M0 314 aa12.27□□□□□ -0.45
PNKP-217ENST00000625216 IGHV5-51A0A0C4DH38 117 aa12.26□□□□□ -0.45
PNKP-217ENST00000625216 TLCD2A6NGC4 264 aa12.26□□□□□ -0.45
PNKP-217ENST00000625216 ZNF891A8MT65 544 aaPredicted RBP12.26□□□□□ -0.45
PNKP-217ENST00000625216 COPEO14579 308 aa12.26□□□□□ -0.45
PNKP-217ENST00000625216 PRMT5O14744 637 aaPredicted RBP12.26□□□□□ -0.45
PNKP-217ENST00000625216 GLRA3O75311 464 aa12.26□□□□□ -0.45
PNKP-217ENST00000625216 NIPSNAP2O75323 286 aa12.26□□□□□ -0.45
PNKP-217ENST00000625216 PKMP14618 531 aaKnown RBP12.26□□□□□ -0.45
PNKP-217ENST00000625216 LIFP15018 202 aa12.26□□□□□ -0.45
PNKP-217ENST00000625216 STMN1P16949 149 aa12.26□□□□□ -0.45
PNKP-217ENST00000625216 WT1P19544 449 aaPredicted RBP12.26□□□□□ -0.45
PNKP-217ENST00000625216 ARL4DP49703 201 aa12.26□□□□□ -0.45
PNKP-217ENST00000625216 WDR4P57081 412 aaKnown RBP12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms