RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 DNAJB8Q8NHS0 232 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 PYURFQ96I23 114 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 ITCHQ96J02 903 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 MAP6Q96JE9 813 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 SDHCQ99643 169 aaPredicted RBP10.57□□□□□ -0.72
UPF3A-212ENST00000619079 RHNO1Q9BSD3 238 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 COLEC11Q9BWP8 271 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 SLC22A4Q9H015 551 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 C14orf119Q9NWQ9 140 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 VAPAQ9P0L0 249 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 KLK4Q9Y5K2 254 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 TSC2P49815 1807 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 SCN10AQ9Y5Y9 1956 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 A0A0G2JMP0 313 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 FAM220BPB1ANY3 271 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 ARHGAP33O14559 1287 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 TRIM3O75382 744 aaPredicted RBP10.56□□□□□ -0.72
UPF3A-212ENST00000619079 FMO4P31512 558 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 PPP1R8Q12972 351 aaKnown RBP10.56□□□□□ -0.72
UPF3A-212ENST00000619079 MLIPQ5VWP3 458 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 ATG9BQ674R7 924 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 CYP20A1Q6UW02 462 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 LYPD8Q6UX82 237 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 GPRIN3Q6ZVF9 776 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 SNX20Q7Z614 316 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 CHPFQ8IZ52 775 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 TCAIMQ8N3R3 496 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 TOR1AIP2Q8NFQ8 470 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 OR2T11Q8NH01 316 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 WDCPQ9H6R7 721 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 NIPAL2Q9H841 368 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 PLCXD1Q9NUJ7 323 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 TMEM39AQ9NV64 488 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 KIF17Q9P2E2 1029 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 UTS2RQ9UKP6 389 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 AKT3Q9Y243 479 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 GINS2Q9Y248 185 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 CCDC182A6NF36 153 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 I6L893 689 aaPredicted RBP10.56□□□□□ -0.72
UPF3A-212ENST00000619079 AP3D1O14617 1153 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 PPEF2O14830 753 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 PDPK1O15530 556 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 SERPINA1P01009 418 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 CLTBP09497 229 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 SLC2A3P11169 496 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 FPR1P21462 350 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 CD72P21854 359 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 DNAJA1P31689 397 aaKnown RBP10.56□□□□□ -0.72
UPF3A-212ENST00000619079 CYP2C18P33260 490 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 THPOP40225 353 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 DAPP51397 102 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 WNT3AP56704 352 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 RBBP7Q16576 425 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 DCAF4L1Q3SXM0 396 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 HABP4Q5JVS0 413 aaKnown RBP10.56□□□□□ -0.72
UPF3A-212ENST00000619079 FBXO47Q5MNV8 452 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 MARCH8Q5T0T0 291 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 C1orf53Q5VUE5 145 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 PM20D1Q6GTS8 502 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 OR2T5Q6IEZ7 315 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 MRNIPQ6NTE8 343 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 CREB3L2Q70SY1 520 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 ANKRD33Q7Z3H0 272 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 ZNF598Q86UK7 904 aaKnown RBP10.56□□□□□ -0.72
UPF3A-212ENST00000619079 KRT73Q86Y46 540 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 ZDHHC21Q8IVQ6 265 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 C7orf61Q8IZ16 206 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 OR2T29Q8NH02 315 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 SNAPC3Q92966 411 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 PPP1R16BQ96T49 567 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 DERL2Q9GZP9 239 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 RANGRFQ9HD47 186 aaPredicted RBP10.56□□□□□ -0.72
UPF3A-212ENST00000619079 ASAH2Q9NR71 780 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 KRT84Q9NSB2 600 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 KLHL21Q9UJP4 597 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 SAMD4AQ9UPU9 718 aaKnown RBP10.56□□□□□ -0.72
UPF3A-212ENST00000619079 NEUROG3Q9Y4Z2 214 aa10.56□□□□□ -0.72
UPF3A-212ENST00000619079 A0A1B0GTL3 188 aa10.55□□□□□ -0.72
UPF3A-212ENST00000619079 WBP4O75554 376 aaKnown RBP10.55□□□□□ -0.72
UPF3A-212ENST00000619079 C22orf31O95567 290 aa10.55□□□□□ -0.72
UPF3A-212ENST00000619079 CTSHP09668 335 aa10.55□□□□□ -0.72
UPF3A-212ENST00000619079 CTRB1P17538 263 aa10.55□□□□□ -0.72
UPF3A-212ENST00000619079 LMO2P25791 158 aa10.55□□□□□ -0.72
UPF3A-212ENST00000619079 RFX2P48378 723 aa10.55□□□□□ -0.72
UPF3A-212ENST00000619079 SCN1BQ07699 218 aa10.55□□□□□ -0.72
UPF3A-212ENST00000619079 FAPQ12884 760 aa10.55□□□□□ -0.72
UPF3A-212ENST00000619079 MAPKAPK3Q16644 382 aa10.55□□□□□ -0.72
UPF3A-212ENST00000619079 Q5BKY6 102 aa10.55□□□□□ -0.72
UPF3A-212ENST00000619079 CTRB2Q6GPI1 263 aa10.55□□□□□ -0.72
UPF3A-212ENST00000619079 CHCHD4Q8N4Q1 142 aa10.55□□□□□ -0.72
UPF3A-212ENST00000619079 GLB1L3Q8NCI6 653 aaPredicted RBP10.55□□□□□ -0.72
UPF3A-212ENST00000619079 B3GALNT2Q8NCR0 500 aa10.55□□□□□ -0.72
UPF3A-212ENST00000619079 ZNF675Q8TD23 568 aa10.55□□□□□ -0.72
UPF3A-212ENST00000619079 DNAJB3Q8WWF6 145 aa10.55□□□□□ -0.72
UPF3A-212ENST00000619079 GTF2H4Q92759 462 aa10.55□□□□□ -0.72
UPF3A-212ENST00000619079 CRELD1Q96HD1 420 aa10.55□□□□□ -0.72
UPF3A-212ENST00000619079 TOX2Q96NM4 488 aa10.55□□□□□ -0.72
UPF3A-212ENST00000619079 NEDD4LQ96PU5 975 aa10.55□□□□□ -0.72
UPF3A-212ENST00000619079 FDXACB1Q9BRP7 624 aaPredicted RBP10.55□□□□□ -0.72
UPF3A-212ENST00000619079 AIFM2Q9BRQ8 373 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms