RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 OPTCQ9UBM4 332 aa14.13□□□□□ -0.15
SHROOM1-208ENST00000617339 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.13□□□□□ -0.15
SHROOM1-208ENST00000617339 ARPC2O15144 300 aa14.13□□□□□ -0.15
SHROOM1-208ENST00000617339 BCAS1O75363 584 aaPredicted RBP14.13□□□□□ -0.15
SHROOM1-208ENST00000617339 GPX3P22352 226 aa14.13□□□□□ -0.15
SHROOM1-208ENST00000617339 PREPP48147 710 aa14.13□□□□□ -0.15
SHROOM1-208ENST00000617339 ATP6V0D1P61421 351 aa14.13□□□□□ -0.15
SHROOM1-208ENST00000617339 SNRPD1P62314 119 aaKnown RBP14.13□□□□□ -0.15
SHROOM1-208ENST00000617339 MPPE1Q53F39 396 aa14.13□□□□□ -0.15
SHROOM1-208ENST00000617339 CHST9Q7L1S5 443 aa14.13□□□□□ -0.15
SHROOM1-208ENST00000617339 R3HCC1LQ7Z5L2 792 aaKnown RBP14.13□□□□□ -0.15
SHROOM1-208ENST00000617339 VRK3Q8IV63 474 aa14.13□□□□□ -0.15
SHROOM1-208ENST00000617339 PELI3Q8N2H9 469 aa14.13□□□□□ -0.15
SHROOM1-208ENST00000617339 SFRP1Q8N474 314 aa14.13□□□□□ -0.15
SHROOM1-208ENST00000617339 FIG4Q92562 907 aa14.13□□□□□ -0.15
SHROOM1-208ENST00000617339 GLMNQ92990 594 aa14.13□□□□□ -0.15
SHROOM1-208ENST00000617339 FUNDC2Q9BWH2 189 aa14.13□□□□□ -0.15
SHROOM1-208ENST00000617339 SUV39H2Q9H5I1 410 aa14.13□□□□□ -0.15
SHROOM1-208ENST00000617339 PNMA8BQ9ULN7 279 aaPredicted RBP14.13□□□□□ -0.15
SHROOM1-208ENST00000617339 SPTBN5Q9NRC6 3674 aaKnown RBP14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 PTPRDP23468 1912 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 SLC22A3O75751 556 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 RHOP08100 348 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 PTPN2P17706 415 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 LHCGRP22888 699 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 RPIAP49247 311 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 SELENBP1Q13228 472 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 KRT33BQ14525 404 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 ATP6AP1Q15904 470 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 TYSND1Q2T9J0 566 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 C6orf136Q5SQH8 315 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 STK32CQ86UX6 486 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 KLHDC8BQ8IXV7 354 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 FLCNQ8NFG4 579 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 PNPT1Q8TCS8 783 aaKnown RBP14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 MYRFLQ96LU7 910 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 COPS8Q99627 209 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 EBPLQ9BY08 206 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 OSGEPL1Q9H4B0 414 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 ELOVL2Q9NXB9 296 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 THSD7BQ9C0I4 1608 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 AGRPO00253 132 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 JRKO75564 520 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 NADKO95544 446 aaPredicted RBP14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 KRT75O95678 551 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 HLCSP50747 726 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 TCEAL5Q5H9L2 206 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 TMTC4Q5T4D3 741 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 RD3Q7Z3Z2 195 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 SIX5Q8N196 739 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 DCAF4L2Q8NA75 395 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 FBXO30Q8TB52 745 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 KLK6Q92876 244 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 NCLNQ969V3 563 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 TADA1Q96BN2 335 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 ZNF347Q96SE7 839 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 UHRF1Q96T88 793 aaPredicted RBP14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 FAM126AQ9BYI3 521 aaPredicted RBP14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 TRIM15Q9C019 465 aa14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 ZNF490Q9ULM2 529 aaPredicted RBP14.12□□□□□ -0.15
SHROOM1-208ENST00000617339 M0R3G1 203 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 RAD51BO15315 384 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 CXCL10P02778 98 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 ESR1P03372 595 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 SERPIND1P05546 499 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 HIST1H2AGP0C0S8 130 aaPredicted RBP14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 HIST1H2ADP20671 130 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 SERPINB1P30740 379 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 HOXD11P31277 338 aaPredicted RBP14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 FAM180BQ6P0A1 224 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 ZNF773Q6PK81 442 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 ADCK1Q86TW2 530 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 SFTPA1Q8IWL2 248 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 PHACTR4Q8IZ21 702 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 CHPFQ8IZ52 775 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 RBFAQ8N0V3 343 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 RAB2BQ8WUD1 216 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 ELMO1Q92556 727 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 L3HYPDHQ96EM0 354 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 HIST1H2AHQ96KK5 128 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 HIST1H2AJQ99878 128 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 H2AFJQ9BTM1 129 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 ACAT2Q9BWD1 397 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 MROQ9BYG7 248 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 TDP1Q9NUW8 608 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 ERVK-11Q9UQG0 969 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 TRIM64CA6NLI5 447 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 LEFTY1O75610 366 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 RASAL1O95294 804 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 DLGAP3O95886 979 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 GBAP04062 536 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 CCT8P50990 548 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 CLCN7P51798 805 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 ACVR1Q04771 509 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 DGCR6Q14129 220 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 MEP1AQ16819 746 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 INTS11Q5TA45 600 aaKnown RBP14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 CCDC81Q6ZN84 652 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 ZBTB2Q8N680 514 aa14.11□□□□□ -0.15
SHROOM1-208ENST00000617339 LRRC58Q96CX6 371 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms