RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 XPNPEP1Q9NQW7 623 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 COMMD3Q9UBI1 195 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 EGFL7Q9UHF1 273 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 RGS14O43566 566 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 PRAMEF2O60811 474 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 SPATA31D3P0C874 917 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 HGFP14210 728 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 NCF1P14598 390 aaPredicted RBP4.85□□□□□ -1.63
VPS13D-213ENST00000613099 C4orf46Q504U0 113 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 KRBOX4Q5JUW0 171 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 ARHGAP40Q5TG30 622 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 SPATA31D4Q6ZUB0 917 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 SLC47A2Q86VL8 602 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 SCGB3A2Q96PL1 93 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 TTYH3Q9C0H2 523 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 CST11Q9H112 138 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 OLAHQ9NV23 265 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 TIMM22Q9Y584 194 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 CROCCQ5TZA2 2017 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 ELOVL7A1L3X0 281 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 PITPNM1O00562 1244 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 GLRBP48167 497 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 LRIT3Q3SXY7 679 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 MINDY4Q4G0A6 757 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 AGMOQ6ZNB7 445 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 MTSS1LQ765P7 747 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 BIRC7Q96CA5 298 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 ZNF219Q9P2Y4 722 aaPredicted RBP4.85□□□□□ -1.63
VPS13D-213ENST00000613099 COPS3Q9UNS2 423 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 SIPA1L3O60292 1781 aaPredicted RBP4.85□□□□□ -1.63
VPS13D-213ENST00000613099 MICAL2O94851 1124 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 CXCR2P25025 360 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 GDI1P31150 447 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 SHEQ5VZ18 495 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 FAM35AQ86V20 835 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 OR52K1Q8NGK4 314 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 YIPF5Q969M3 257 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 COL26A1Q96A83 441 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 TMPRSS11EQ9UL52 423 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 ACTL7AQ9Y615 435 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 M0QZK8 103 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 GGCTO75223 188 aaKnown RBP4.85□□□□□ -1.63
VPS13D-213ENST00000613099 ALDH2P05091 517 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 ALAS2P22557 587 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 RPL9P32969 192 aaKnown RBP4.85□□□□□ -1.63
VPS13D-213ENST00000613099 ETV6P41212 452 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 GCNT1Q02742 428 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 SH3PXD2AQ5TCZ1 1133 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 GJB7Q6PEY0 223 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 ZBTB33Q86T24 672 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 ZNF227Q86WZ6 799 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 INTS12Q96CB8 462 aaKnown RBP4.85□□□□□ -1.63
VPS13D-213ENST00000613099 REPS1Q96D71 796 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 NXF3Q9H4D5 531 aaKnown RBP4.85□□□□□ -1.63
VPS13D-213ENST00000613099 PGAP2Q9UHJ9 254 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 GRXCR2A6NFK2 248 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 XYLBO75191 536 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 MOCS2O96007 188 aaPredicted RBP4.85□□□□□ -1.63
VPS13D-213ENST00000613099 EFNA5P52803 228 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 PER3P56645 1201 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 SELENBP1Q13228 472 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 ELP2Q6IA86 826 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 CBWD2Q8IUF1 395 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 PHTF2Q8N3S3 785 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 NANPQ8TBE9 248 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 OR2M4Q96R27 311 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP4.85□□□□□ -1.635e-7■■□□□ 13.2
VPS13D-213ENST00000613099 CLCA3PQ9Y6N3 262 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 WASH4PA8MWX3 477 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 SLC43A1O75387 559 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 CALCAP01258 141 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 HLA-DPB1P04440 258 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 ZP3P21754 424 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 ADH6P28332 368 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 BCAMP50895 628 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 AFF3P51826 1226 aaKnown RBP4.85□□□□□ -1.63
VPS13D-213ENST00000613099 FAM160B1Q5W0V3 765 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 ZNF529Q6P280 563 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 METAP1DQ6UB28 335 aaPredicted RBP4.85□□□□□ -1.63
VPS13D-213ENST00000613099 HID1Q8IV36 788 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 TCTE3Q8IZS6 198 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 Q8N9G6 341 aaPredicted RBP4.85□□□□□ -1.63
VPS13D-213ENST00000613099 TMEM185AQ8NFB2 350 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 OR6M1Q8NGM8 313 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 HAVCR2Q8TDQ0 301 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 SLC41A3Q96GZ6 507 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 ISM1B1AKI9 464 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 FADS1O60427 444 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 PDE8BO95263 885 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 HEXBP07686 556 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 PET100P0DJ07 73 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 SHMT1P34896 483 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 SPAM1P38567 509 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 DYRK1AQ13627 763 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 UGT8Q16880 541 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 UAP1L1Q3KQV9 507 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 MSANTD2Q6P1R3 559 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 ZNF527Q8NB42 609 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 ZNF680Q8NEM1 530 aa4.85□□□□□ -1.63
VPS13D-213ENST00000613099 C19orf43Q9BQ61 176 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms