RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 NEK10Q6ZWH5 1172 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 GPSM1Q86YR5 675 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 ZNF547Q8IVP9 402 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 PACRGLQ8N7B6 248 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 TWIST2Q8WVJ9 160 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 RLN3Q8WXF3 142 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 ZNF597Q96LX8 424 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 PKP2Q99959 881 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 MYOCQ99972 504 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 OSBPL11Q9BXB4 747 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 MRPS26Q9BYN8 205 aaKnown RBP11.39□□□□□ -0.59
VRK3-223ENST00000601341 TRIM54Q9BYV2 358 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 COPS7BQ9H9Q2 264 aaPredicted RBP11.39□□□□□ -0.59
VRK3-223ENST00000601341 MID1IP1Q9NPA3 183 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 HS3ST3A1Q9Y663 406 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 AP4B1Q9Y6B7 739 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 DNMT3AQ9Y6K1 912 aaPredicted RBP11.39□□□□□ -0.59
VRK3-223ENST00000601341 KLHL33A6NCF5 533 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 PRORSD1PA6NEY8 169 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 POM121BA6NF01 834 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 PRAMEF26H0Y7S4 382 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 NDUFS2O75306 463 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 POP7O75817 140 aaKnown RBP11.39□□□□□ -0.59
VRK3-223ENST00000601341 CHEK2O96017 543 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 IGHV4-34P06331 123 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 ALDOCP09972 364 aaKnown RBP11.39□□□□□ -0.59
VRK3-223ENST00000601341 MPC1LP0DKB6 136 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 BMP2P12643 396 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 GFAPP14136 432 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 ZNF26P17031 533 aaPredicted RBP11.39□□□□□ -0.59
VRK3-223ENST00000601341 TXNL4AP83876 142 aaKnown RBP11.39□□□□□ -0.59
VRK3-223ENST00000601341 PLOD1Q02809 727 aaPredicted RBP11.39□□□□□ -0.59
VRK3-223ENST00000601341 CLCQ05315 142 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 PFKFB4Q16877 469 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 CRTC3Q6UUV7 619 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 LRRTM4Q86VH4 590 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 FUNDC1Q8IVP5 155 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 FBXO39Q8N4B4 442 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 SKA2Q8WVK7 121 aaPredicted RBP11.39□□□□□ -0.59
VRK3-223ENST00000601341 GLMNQ92990 594 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 PCED1AQ9H1Q7 454 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 RMI1Q9H9A7 625 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 VCX3AQ9NNX9 186 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 IKZF3Q9UKT9 509 aa11.39□□□□□ -0.59
VRK3-223ENST00000601341 SLC5A10A0PJK1 596 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 MGAT4DA6NG13 374 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 TMEM202A6NGA9 273 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 SUPT3HB4E1H0 165 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 TOR1BO14657 336 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 SUPT3HO75486 399 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 ESRRBO95718 433 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 UROSP10746 265 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 KELP23276 732 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 PBLDP30039 288 aaPredicted RBP11.38□□□□□ -0.59
VRK3-223ENST00000601341 PEX19P40855 299 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 CLDN2P57739 230 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 KIAA1024LP59773 190 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 YPEL5P62699 121 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 DYNC1I2Q13409 638 aaKnown RBP11.38□□□□□ -0.59
VRK3-223ENST00000601341 TJAP1Q5JTD0 557 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 C6orf10Q5SRN2 563 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 CLEC6AQ6EIG7 209 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 BORAQ6PGQ7 559 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 SBSNQ6UWP8 590 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 FRA10AC1Q70Z53 315 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 AMZ2Q86W34 360 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 DHFR2Q86XF0 187 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 CFAP206Q8IYR0 622 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 FAM160A2Q8N612 972 aaPredicted RBP11.38□□□□□ -0.59
VRK3-223ENST00000601341 ANKFN1Q8N957 763 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 OR2L2Q8NH16 312 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 HM13Q8TCT9 377 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 EXT2Q93063 718 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 BIRC7Q96CA5 298 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 DGCR14Q96DF8 476 aaKnown RBP11.38□□□□□ -0.59
VRK3-223ENST00000601341 SLC45A3Q96JT2 553 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 SPACA7Q96KW9 195 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 BMFQ96LC9 184 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 C3orf30Q96M34 536 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 SH3GL3Q99963 347 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 BRINP2Q9C0B6 783 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 FAM8A1Q9UBU6 413 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 ZNHIT2Q9UHR6 403 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 TSR3Q9UJK0 312 aaKnown RBP11.38□□□□□ -0.59
VRK3-223ENST00000601341 SLC17A4Q9Y2C5 497 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.38□□□□□ -0.59
VRK3-223ENST00000601341 FIS1Q9Y3D6 152 aa11.38□□□□□ -0.59
VRK3-223ENST00000601341 VCANP13611 3396 aa11.37□□□□□ -0.59
VRK3-223ENST00000601341 K7ESF4 209 aa11.37□□□□□ -0.59
VRK3-223ENST00000601341 UBXN8O00124 270 aa11.37□□□□□ -0.59
VRK3-223ENST00000601341 TXNDC9O14530 226 aa11.37□□□□□ -0.59
VRK3-223ENST00000601341 PIP5K1BO14986 540 aa11.37□□□□□ -0.59
VRK3-223ENST00000601341 ANGPT2O15123 496 aa11.37□□□□□ -0.59
VRK3-223ENST00000601341 AXIN1O15169 862 aa11.37□□□□□ -0.59
VRK3-223ENST00000601341 KMOO15229 486 aa11.37□□□□□ -0.59
VRK3-223ENST00000601341 HNRNPRO43390 633 aaKnown RBP11.37□□□□□ -0.59
VRK3-223ENST00000601341 SNX2O60749 519 aa11.37□□□□□ -0.59
VRK3-223ENST00000601341 CLPTM1O96005 669 aa11.37□□□□□ -0.59
VRK3-223ENST00000601341 CEACAM5P06731 702 aa11.37□□□□□ -0.59
VRK3-223ENST00000601341 C8GP07360 202 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms