RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 RPL22P35268 128 aaKnown RBP16.88■□□□□ 0.29
SHKBP1-223ENST00000600552 OR1D4P47884 311 aa16.88■□□□□ 0.29
SHKBP1-223ENST00000600552 EIF3BP55884 814 aaKnown RBP16.88■□□□□ 0.29
SHKBP1-223ENST00000600552 AARS2Q5JTZ9 985 aaKnown RBP16.88■□□□□ 0.29
SHKBP1-223ENST00000600552 FCRL6Q6DN72 434 aa16.88■□□□□ 0.29
SHKBP1-223ENST00000600552 CES3Q6UWW8 571 aa16.88■□□□□ 0.29
SHKBP1-223ENST00000600552 GSTA5Q7RTV2 222 aa16.88■□□□□ 0.29
SHKBP1-223ENST00000600552 PRSS58Q8IYP2 241 aa16.88■□□□□ 0.29
SHKBP1-223ENST00000600552 ZADH2Q8N4Q0 377 aa16.88■□□□□ 0.29
SHKBP1-223ENST00000600552 FAM136AQ96C01 138 aa16.88■□□□□ 0.29
SHKBP1-223ENST00000600552 MIPEPQ99797 713 aa16.88■□□□□ 0.29
SHKBP1-223ENST00000600552 SELENOSQ9BQE4 189 aa16.88■□□□□ 0.29
SHKBP1-223ENST00000600552 CHRNA10Q9GZZ6 450 aa16.88■□□□□ 0.29
SHKBP1-223ENST00000600552 SOX17Q9H6I2 414 aaPredicted RBP16.88■□□□□ 0.29
SHKBP1-223ENST00000600552 SLC22A11Q9NSA0 550 aa16.88■□□□□ 0.29
SHKBP1-223ENST00000600552 CUTCQ9NTM9 273 aa16.88■□□□□ 0.29
SHKBP1-223ENST00000600552 PAK5Q9P286 719 aa16.88■□□□□ 0.29
SHKBP1-223ENST00000600552 FBXL4Q9UKA2 621 aa16.88■□□□□ 0.29
SHKBP1-223ENST00000600552 B3GNT3Q9Y2A9 372 aa16.88■□□□□ 0.29
SHKBP1-223ENST00000600552 MAU2Q9Y6X3 613 aa16.88■□□□□ 0.29
SHKBP1-223ENST00000600552 SPENQ96T58 3664 aaKnown RBP16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 PRMT5O14744 637 aaPredicted RBP16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 EIF2S1P05198 315 aaKnown RBP16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 PSMB5P28074 263 aa16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 NMBRP28336 390 aa16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 ARSFP54793 590 aa16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 VSX2P58304 361 aaPredicted RBP16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 BASP1P80723 227 aaKnown RBP16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 TSTA3Q13630 321 aaPredicted RBP16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 GRB7Q14451 532 aa16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 RPS6KA1Q15418 735 aa16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 CCSMST1Q4G0I0 132 aa16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 PCID2Q5JVF3 399 aa16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 MRPL14Q6P1L8 145 aaKnown RBP16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 CNSTQ6PJW8 725 aa16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 UNC5DQ6UXZ4 953 aa16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 GAS2L3Q86XJ1 694 aa16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 PARP9Q8IXQ6 854 aa16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 DTWD1Q8N5C7 304 aa16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 RNF10Q8N5U6 811 aaKnown RBP16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 TTC29Q8NA56 475 aaPredicted RBP16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 OR2L8Q8NGY9 312 aa16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 SLC22A18Q96BI1 424 aa16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 FRMD8P1Q9BZ68 369 aaPredicted RBP16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 ZNF552Q9H707 407 aaPredicted RBP16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 STOX2Q9P2F5 926 aaPredicted RBP16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 RIMKLBQ9ULI2 386 aa16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 COPG1Q9Y678 874 aaKnown RBP16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 NFS1Q9Y697 457 aa16.87■□□□□ 0.29
SHKBP1-223ENST00000600552 A0A1B0GX78 115 aa16.86■□□□□ 0.29
SHKBP1-223ENST00000600552 GOLGA8KD6RF30 607 aa16.86■□□□□ 0.29
SHKBP1-223ENST00000600552 GOLGA8TH3BQL2 631 aa16.86■□□□□ 0.29
SHKBP1-223ENST00000600552 RASGRF2O14827 1237 aa16.86■□□□□ 0.29
SHKBP1-223ENST00000600552 S1PR4O95977 384 aa16.86■□□□□ 0.29
SHKBP1-223ENST00000600552 PIM1P11309 404 aaPredicted RBP16.86■□□□□ 0.29
SHKBP1-223ENST00000600552 ITGAXP20702 1163 aa16.86■□□□□ 0.29
SHKBP1-223ENST00000600552 VARSP26640 1264 aaKnown RBP16.86■□□□□ 0.29
SHKBP1-223ENST00000600552 FMO4P31512 558 aa16.86■□□□□ 0.29
SHKBP1-223ENST00000600552 TTPAP49638 278 aa16.86■□□□□ 0.29
SHKBP1-223ENST00000600552 ACVR1Q04771 509 aa16.86■□□□□ 0.29
SHKBP1-223ENST00000600552 ELOAQ14241 798 aaKnown RBP16.86■□□□□ 0.29
SHKBP1-223ENST00000600552 HIF1AQ16665 826 aa16.86■□□□□ 0.29
SHKBP1-223ENST00000600552 ZC3H12BQ5HYM0 836 aaKnown RBP16.86■□□□□ 0.29
SHKBP1-223ENST00000600552 IRAK1BP1Q5VVH5 260 aa16.86■□□□□ 0.29
SHKBP1-223ENST00000600552 OTOAQ7RTW8 1153 aa16.86■□□□□ 0.29
SHKBP1-223ENST00000600552 OVCH1Q7RTY7 1134 aa16.86■□□□□ 0.29
SHKBP1-223ENST00000600552 TM9SF4Q92544 642 aa16.86■□□□□ 0.29
SHKBP1-223ENST00000600552 SLC6A20Q9NP91 592 aa16.86■□□□□ 0.29
SHKBP1-223ENST00000600552 GNPTGQ9UJJ9 305 aa16.86■□□□□ 0.29
SHKBP1-223ENST00000600552 A0A0J9YVX5 310 aa16.85■□□□□ 0.29
SHKBP1-223ENST00000600552 AGPSO00116 658 aa16.85■□□□□ 0.29
SHKBP1-223ENST00000600552 DSCR3O14972 297 aa16.85■□□□□ 0.29
SHKBP1-223ENST00000600552 KLHL41O60662 606 aa16.85■□□□□ 0.29
SHKBP1-223ENST00000600552 SLCO2B1O94956 709 aa16.85■□□□□ 0.29
SHKBP1-223ENST00000600552 MGAT1P26572 445 aa16.85■□□□□ 0.29
SHKBP1-223ENST00000600552 COL8A1P27658 744 aa16.85■□□□□ 0.29
SHKBP1-223ENST00000600552 GRM7Q14831 915 aa16.85■□□□□ 0.29
SHKBP1-223ENST00000600552 RBBP7Q16576 425 aa16.85■□□□□ 0.29
SHKBP1-223ENST00000600552 NKG7Q16617 165 aa16.85■□□□□ 0.29
SHKBP1-223ENST00000600552 WASHC2DQ5SRD0 308 aa16.85■□□□□ 0.29
SHKBP1-223ENST00000600552 RAB42Q8N4Z0 105 aa16.85■□□□□ 0.29
SHKBP1-223ENST00000600552 RAD51AP1Q96B01 352 aa16.85■□□□□ 0.29
SHKBP1-223ENST00000600552 CNDP1Q96KN2 507 aa16.85■□□□□ 0.29
SHKBP1-223ENST00000600552 FOPNLQ96NB1 174 aa16.85■□□□□ 0.29
SHKBP1-223ENST00000600552 PANX3Q96QZ0 392 aa16.85■□□□□ 0.29
SHKBP1-223ENST00000600552 MENTQ9BUN1 341 aa16.85■□□□□ 0.29
SHKBP1-223ENST00000600552 ACAT2Q9BWD1 397 aa16.85■□□□□ 0.29
SHKBP1-223ENST00000600552 YIPF2Q9BWQ6 316 aa16.85■□□□□ 0.29
SHKBP1-223ENST00000600552 BFARQ9NZS9 450 aa16.85■□□□□ 0.29
SHKBP1-223ENST00000600552 CTSFQ9UBX1 484 aa16.85■□□□□ 0.29
SHKBP1-223ENST00000600552 ZC3H7BQ9UGR2 993 aaKnown RBP16.85■□□□□ 0.29
SHKBP1-223ENST00000600552 DOCK10Q96BY6 2186 aa16.84■□□□□ 0.29
SHKBP1-223ENST00000600552 NRP2O60462 931 aa16.84■□□□□ 0.29
SHKBP1-223ENST00000600552 IPO13O94829 963 aaKnown RBP16.84■□□□□ 0.29
SHKBP1-223ENST00000600552 VAPBO95292 243 aa16.84■□□□□ 0.29
SHKBP1-223ENST00000600552 MMP11P24347 488 aa16.84■□□□□ 0.29
SHKBP1-223ENST00000600552 KCNJ1P48048 391 aa16.84■□□□□ 0.29
SHKBP1-223ENST00000600552 AIMP2Q13155 320 aaKnown RBP16.84■□□□□ 0.29
SHKBP1-223ENST00000600552 TCTE1Q5JU00 501 aa16.84■□□□□ 0.29
SHKBP1-223ENST00000600552 PRAMEF13Q5VWM6 474 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms