RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 CFAP206Q8IYR0 622 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 ZNF248Q8NDW4 579 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 DDHD1Q8NEL9 900 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 KBTBD8Q8NFY9 601 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 HPSE2Q8WWQ2 592 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 ERP27Q96DN0 273 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 SPDL1Q96EA4 605 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 NSL1Q96IY1 281 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 ZNF830Q96NB3 372 aaPredicted RBP4.69□□□□□ -1.66
NUP88-213ENST00000576862 ASCL2Q99929 193 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 NUDT16L1Q9BRJ7 211 aaKnown RBP4.69□□□□□ -1.66
NUP88-213ENST00000576862 GFRA4Q9GZZ7 299 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 WNT5BQ9H1J7 359 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 OPA3Q9H6K4 179 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 INTS10Q9NVR2 710 aaKnown RBP4.69□□□□□ -1.66
NUP88-213ENST00000576862 CPSF2Q9P2I0 782 aaKnown RBP4.69□□□□□ -1.66
NUP88-213ENST00000576862 PPIEQ9UNP9 301 aaKnown RBP4.69□□□□□ -1.66
NUP88-213ENST00000576862 CROCC2H7BZ55 1655 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 RTEL1-TNFRSF6BF6WH68 1400 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 SNED1Q8TER0 1413 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 ERBINQ96RT1 1412 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 CDC42BPBQ9Y5S2 1711 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 RPRD2Q5VT52 1461 aaKnown RBP4.69□□□□□ -1.66
NUP88-213ENST00000576862 TEX14Q8IWB6 1497 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 ZFYVE16Q7Z3T8 1539 aa4.68□□□□□ -1.66
NUP88-213ENST00000576862 hCG_1809904A0A1W2PP81 198 aa4.68□□□□□ -1.66
NUP88-213ENST00000576862 A0A1W2PPE2 198 aa4.68□□□□□ -1.66
NUP88-213ENST00000576862 A0A1W2PPM1 405 aa4.68□□□□□ -1.66
NUP88-213ENST00000576862 A0A1W2PR64 198 aa4.68□□□□□ -1.66
NUP88-213ENST00000576862 ZNF821O75541 412 aaPredicted RBP4.68□□□□□ -1.66
NUP88-213ENST00000576862 AP2A2O94973 939 aa4.68□□□□□ -1.66
NUP88-213ENST00000576862 FAM157CP0CG43 387 aa4.68□□□□□ -1.66
NUP88-213ENST00000576862 MATR3P43243 847 aaKnown RBP eCLIP4.68□□□□□ -1.66
NUP88-213ENST00000576862 LIG4P49917 911 aa4.68□□□□□ -1.66
NUP88-213ENST00000576862 IL11RAQ14626 422 aa4.68□□□□□ -1.66
NUP88-213ENST00000576862 CCDC184Q52MB2 194 aa4.68□□□□□ -1.66
NUP88-213ENST00000576862 ARHGEF16Q5VV41 709 aa4.68□□□□□ -1.66
NUP88-213ENST00000576862 C16orf54Q6UWD8 224 aa4.68□□□□□ -1.66
NUP88-213ENST00000576862 ZSCAN30Q86W11 494 aa4.68□□□□□ -1.66
NUP88-213ENST00000576862 OR2T11Q8NH01 316 aa4.68□□□□□ -1.66
NUP88-213ENST00000576862 WBP2Q969T9 261 aa4.68□□□□□ -1.66
NUP88-213ENST00000576862 NXNL1Q96CM4 212 aa4.68□□□□□ -1.66
NUP88-213ENST00000576862 OLAHQ9NV23 265 aa4.68□□□□□ -1.66
NUP88-213ENST00000576862 PRMT7Q9NVM4 692 aaPredicted RBP4.68□□□□□ -1.66
NUP88-213ENST00000576862 HAO2Q9NYQ3 351 aa4.68□□□□□ -1.66
NUP88-213ENST00000576862 CACNG5Q9UF02 275 aa4.68□□□□□ -1.66
NUP88-213ENST00000576862 DAPK2Q9UIK4 370 aa4.68□□□□□ -1.66
NUP88-213ENST00000576862 FAM169AQ9Y6X4 670 aa4.68□□□□□ -1.66
NUP88-213ENST00000576862 POGZQ7Z3K3 1410 aa4.68□□□□□ -1.66
NUP88-213ENST00000576862 PLA2R1Q13018 1463 aa4.68□□□□□ -1.66
NUP88-213ENST00000576862 DUOX2Q9NRD8 1548 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 FAM135AQ9P2D6 1515 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 PLXNC1O60486 1568 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 RPN1P04843 607 aaKnown RBP4.67□□□□□ -1.66
NUP88-213ENST00000576862 GPIP06744 558 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 ADRB2P07550 413 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 PFKFB1P16118 471 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 PTPN3P26045 913 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 ERVK11-1P61568 191 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 KCNJ10P78508 379 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 MAT1AQ00266 395 aaKnown RBP4.67□□□□□ -1.66
NUP88-213ENST00000576862 TUBB2AQ13885 445 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 TMEM187Q14656 261 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 KLHL26Q53HC5 615 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 SYT14P1Q58G82 188 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 FAM133BQ5BKY9 247 aaKnown RBP4.67□□□□□ -1.66
NUP88-213ENST00000576862 LCE1FQ5T754 118 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 FAM198BQ6UWH4 519 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 ANKRD23Q86SG2 305 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 TTC30BQ8N4P2 665 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 OTUD6BQ8N6M0 293 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 AVL9Q8NBF6 648 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 OR11H4Q8NGC9 324 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 OR4C3Q8NH37 302 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 SSMEM1Q8WWF3 244 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 DHX58Q96C10 678 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 TUBB2BQ9BVA1 445 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 CCDC106Q9BWC9 280 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 APOL6Q9BWW8 343 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 GPR88Q9GZN0 384 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 FGF22Q9HCT0 170 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 CLIC5Q9NZA1 410 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 MORF4L1Q9UBU8 362 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 ANAPC2Q9UJX6 822 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 MRPS28Q9Y2Q9 187 aaKnown RBP4.67□□□□□ -1.66
NUP88-213ENST00000576862 MAGI2Q86UL8 1455 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 ADGBQ8N7X0 1667 aa4.67□□□□□ -1.66
NUP88-213ENST00000576862 DHX29Q7Z478 1369 aaKnown RBP4.66□□□□□ -1.66
NUP88-213ENST00000576862 RIMBP3CA6NJZ7 1639 aa4.66□□□□□ -1.66
NUP88-213ENST00000576862 RIMBP3BA6NNM3 1639 aa4.66□□□□□ -1.66
NUP88-213ENST00000576862 RIMBP3Q9UFD9 1639 aa4.66□□□□□ -1.66
NUP88-213ENST00000576862 IGHV4-4A0A075B6R2 117 aa4.66□□□□□ -1.66
NUP88-213ENST00000576862 MEIOCA2RUB1 952 aa4.66□□□□□ -1.66
NUP88-213ENST00000576862 MEIS2O14770 477 aa4.66□□□□□ -1.66
NUP88-213ENST00000576862 RAF1P04049 648 aa4.66□□□□□ -1.66
NUP88-213ENST00000576862 ABCB1P08183 1280 aaPredicted RBP4.66□□□□□ -1.66
NUP88-213ENST00000576862 LINGO3P0C6S8 592 aa4.66□□□□□ -1.66
NUP88-213ENST00000576862 ZNF883P0CG24 379 aa4.66□□□□□ -1.66
NUP88-213ENST00000576862 SMIM18P0DKX4 95 aa4.66□□□□□ -1.66
NUP88-213ENST00000576862 HSPA8P11142 646 aaKnown RBP4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms