RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 KPNA7A9QM74 516 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 AKR1B15C9JRZ8 316 aaPredicted RBP5.63□□□□□ -1.51
VPS53-219ENST00000576019 H0YIZ8 118 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 RNASET2O00584 256 aaKnown RBP5.63□□□□□ -1.51
VPS53-219ENST00000576019 MED24O75448 989 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 GH1P01241 217 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 ICAM1P05362 532 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 CYC1P08574 325 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 SBK2P0C263 348 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 TPBGLP0DKB5 382 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 PDHBP11177 359 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 NCF1P14598 390 aaPredicted RBP5.63□□□□□ -1.51
VPS53-219ENST00000576019 LBPP18428 481 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 DDX6P26196 483 aaKnown RBP eCLIP5.63□□□□□ -1.51
VPS53-219ENST00000576019 SFNP31947 248 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 CHRNA3P32297 505 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 ABCG1P45844 678 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 CXCR3P49682 368 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 UCP2P55851 309 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 TRA2BP62995 288 aaKnown RBP5.63□□□□□ -1.51
VPS53-219ENST00000576019 BEX3Q00994 111 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 PRKCEQ02156 737 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 PNLIPRP3Q17RR3 467 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 VMACQ2NL98 169 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 ZXDCQ2QGD7 858 aaPredicted RBP5.63□□□□□ -1.51
VPS53-219ENST00000576019 BEAN1Q3B7T3 259 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 FUT11Q495W5 492 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 IQCCQ4KMZ1 466 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 CEP55Q53EZ4 464 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 ESCO2Q56NI9 601 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 VWA5B1Q5TIE3 1220 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 MCTP1Q6DN14 999 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 ANKRD54Q6NXT1 300 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 CASC4Q6P4E1 433 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 LIN28BQ6ZN17 250 aaKnown RBP eCLIP5.63□□□□□ -1.51
VPS53-219ENST00000576019 INTS8Q75QN2 995 aaKnown RBP5.63□□□□□ -1.51
VPS53-219ENST00000576019 TFAP2DQ7Z6R9 452 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 RBM23Q86U06 439 aaKnown RBP5.63□□□□□ -1.51
VPS53-219ENST00000576019 TLK2Q86UE8 772 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 TMEM173Q86WV6 379 aaPredicted RBP5.63□□□□□ -1.51
VPS53-219ENST00000576019 C9orf43Q8TAL5 461 aaPredicted RBP5.63□□□□□ -1.51
VPS53-219ENST00000576019 KIAA1524Q8TCG1 905 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 LRRC8CQ8TDW0 803 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 NSMAFQ92636 917 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 PGBD1Q96JS3 809 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 SLC41A2Q96JW4 573 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 KCNK16Q96T55 309 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 PCGF1Q9BSM1 259 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 AKIRIN1Q9H9L7 192 aaPredicted RBP5.63□□□□□ -1.51
VPS53-219ENST00000576019 C17orf75Q9HAS0 396 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 EQTNQ9NQ60 294 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 PAPOLBQ9NRJ5 636 aaKnown RBP5.63□□□□□ -1.51
VPS53-219ENST00000576019 ARL8BQ9NVJ2 186 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 MIS18AQ9NYP9 233 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 VPS18Q9P253 973 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 SLC8A2Q9UPR5 921 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 MYH3P11055 1940 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 EMSYQ7Z589 1322 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 SALL3Q9BXA9 1300 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 CACNA1DQ01668 2161 aa5.63□□□□□ -1.51
VPS53-219ENST00000576019 SPTBN1Q01082 2364 aaKnown RBP5.62□□□□□ -1.51
VPS53-219ENST00000576019 WDR27A2RRH5 827 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 YY2O15391 372 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 NARSO43776 548 aaKnown RBP5.62□□□□□ -1.51
VPS53-219ENST00000576019 DIRAS3O95661 229 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 MT-ATP6P00846 226 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 PCCAP05165 728 aaPredicted RBP5.62□□□□□ -1.51
VPS53-219ENST00000576019 TDGF1P13385 188 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 ARF4P18085 180 aaPredicted RBP5.62□□□□□ -1.51
VPS53-219ENST00000576019 VCLP18206 1134 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 KELP23276 732 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 DNAJB1P25685 340 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 TKTP29401 623 aaKnown RBP5.62□□□□□ -1.51
VPS53-219ENST00000576019 CENPAP49450 140 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 CLCNKBP51801 687 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 HSPB3Q12988 150 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 MRPL28Q13084 256 aaKnown RBP5.62□□□□□ -1.51
VPS53-219ENST00000576019 ITGADQ13349 1161 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 KARSQ15046 597 aaKnown RBP5.62□□□□□ -1.51
VPS53-219ENST00000576019 C2orf68Q2NKX9 166 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 AWAT1Q58HT5 328 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 TCTN3Q6NUS6 607 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 IRGCQ6NXR0 463 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 SLC27A1Q6PCB7 646 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 TMEM65Q6PI78 240 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 BRAT1Q6PJG6 821 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 TRIM72Q6ZMU5 477 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 PQLC2Q6ZP29 291 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 LPCAT2Q7L5N7 544 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 TRAPPC11Q7Z392 1133 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 BCDIN3DQ7Z5W3 292 aaKnown RBP5.62□□□□□ -1.51
VPS53-219ENST00000576019 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.62□□□□□ -1.51
VPS53-219ENST00000576019 IGFN1Q86VF2 1251 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 ELMOD2Q8IZ81 293 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 KDM8Q8N371 416 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 GALNT16Q8N428 558 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 PARP16Q8N5Y8 322 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 NCOA7Q8NI08 942 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 HDAC7Q8WUI4 952 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 TFAP2BQ92481 460 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms