RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 MYCLP1P12525 358 aaPredicted RBP22.18■■□□□ 1.14
VPS53-211ENST00000571805 SNRPD1P62314 119 aaKnown RBP22.18■■□□□ 1.14
VPS53-211ENST00000571805 BOP1Q14137 746 aaKnown RBP22.18■■□□□ 1.14
VPS53-211ENST00000571805 PRAMEF9Q5VWM5 478 aa22.18■■□□□ 1.14
VPS53-211ENST00000571805 VRK3Q8IV63 474 aa22.18■■□□□ 1.14
VPS53-211ENST00000571805 TCAIMQ8N3R3 496 aa22.18■■□□□ 1.14
VPS53-211ENST00000571805 LMLNQ96KR4 655 aa22.18■■□□□ 1.14
VPS53-211ENST00000571805 MCCC1Q96RQ3 725 aaPredicted RBP22.18■■□□□ 1.14
VPS53-211ENST00000571805 SUV39H2Q9H5I1 410 aa22.18■■□□□ 1.14
VPS53-211ENST00000571805 NPIPB8E9PQR5 432 aa22.18■■□□□ 1.14
VPS53-211ENST00000571805 NUAK1O60285 661 aa22.18■■□□□ 1.14
VPS53-211ENST00000571805 CCNA2P20248 432 aa22.18■■□□□ 1.14
VPS53-211ENST00000571805 ISL1P61371 349 aa22.18■■□□□ 1.14
VPS53-211ENST00000571805 HSPA14Q0VDF9 509 aa22.18■■□□□ 1.14
VPS53-211ENST00000571805 TBC1D25Q3MII6 688 aa22.18■■□□□ 1.14
VPS53-211ENST00000571805 DENND4CQ5VZ89 1909 aa22.18■■□□□ 1.14
VPS53-211ENST00000571805 CES5AQ6NT32 575 aa22.18■■□□□ 1.14
VPS53-211ENST00000571805 APIPQ96GX9 242 aa22.18■■□□□ 1.14
VPS53-211ENST00000571805 REXO5Q96IC2 774 aaKnown RBP22.18■■□□□ 1.14
VPS53-211ENST00000571805 EGLN2Q96KS0 407 aa22.18■■□□□ 1.14
VPS53-211ENST00000571805 GPRC5BQ9NZH0 403 aa22.18■■□□□ 1.14
VPS53-211ENST00000571805 LOC100130705A0A1B0GUX0 176 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 HS6ST1O60243 411 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 CKMP06732 381 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 C8GP07360 202 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 OR56A5P0C7T3 313 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 PFKLP17858 780 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 GABRR2P28476 465 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 MAPK10P53779 464 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 GABARAPL2P60520 117 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 VAC14Q08AM6 782 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 ABHD18Q0P651 414 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 BNIP3Q12983 259 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 TMED1Q13445 227 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 PGS1Q32NB8 556 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 PTCHD3Q3KNS1 767 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 USP45Q70EL2 814 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 DCP2Q8IU60 420 aaKnown RBP22.17■■□□□ 1.14
VPS53-211ENST00000571805 SLC22A15Q8IZD6 547 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 PYCR2Q96C36 320 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 MAGEB3O15480 346 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 RECQL5O94762 991 aaPredicted RBP22.17■■□□□ 1.14
VPS53-211ENST00000571805 ZNF182P17025 639 aaPredicted RBP22.17■■□□□ 1.14
VPS53-211ENST00000571805 ANKDD1AQ495B1 522 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 XKR5Q6UX68 686 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 ZC3H7AQ8IWR0 971 aaKnown RBP22.17■■□□□ 1.14
VPS53-211ENST00000571805 FAM9CQ8IZT9 166 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 BPIFB6Q8NFQ5 453 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 OR10Q1Q8NGQ4 319 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 POP5Q969H6 163 aaKnown RBP22.17■■□□□ 1.14
VPS53-211ENST00000571805 ZNF558Q96NG5 402 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 CSF3RQ99062 836 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 C3orf18Q9UK00 162 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 ZNF510Q9Y2H8 683 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 SH3BP1Q9Y3L3 701 aa22.17■■□□□ 1.14
VPS53-211ENST00000571805 NOL3O60936 208 aaKnown RBP22.16■■□□□ 1.14
VPS53-211ENST00000571805 HOXB6P17509 224 aaKnown RBP22.16■■□□□ 1.14
VPS53-211ENST00000571805 AGXTP21549 392 aa22.16■■□□□ 1.14
VPS53-211ENST00000571805 MAGEA2P43356 314 aa22.16■■□□□ 1.14
VPS53-211ENST00000571805 HNMTP50135 292 aa22.16■■□□□ 1.14
VPS53-211ENST00000571805 TPD52P55327 224 aaPredicted RBP22.16■■□□□ 1.14
VPS53-211ENST00000571805 SLC7A9P82251 487 aa22.16■■□□□ 1.14
VPS53-211ENST00000571805 SLC14A1Q13336 389 aa22.16■■□□□ 1.14
VPS53-211ENST00000571805 ZNF829Q3KNS6 432 aaPredicted RBP22.16■■□□□ 1.14
VPS53-211ENST00000571805 ZNF691Q5VV52 312 aa22.16■■□□□ 1.14
VPS53-211ENST00000571805 DET1Q7L5Y6 550 aa22.16■■□□□ 1.14
VPS53-211ENST00000571805 VNN3Q9NY84 501 aa22.16■■□□□ 1.14
VPS53-211ENST00000571805 TMED5Q9Y3A6 229 aa22.16■■□□□ 1.14
VPS53-211ENST00000571805 NRG2O14511 850 aaPredicted RBP22.16■■□□□ 1.14
VPS53-211ENST00000571805 SLC16A6O15403 523 aa22.16■■□□□ 1.14
VPS53-211ENST00000571805 BNIP3LO60238 219 aa22.16■■□□□ 1.14
VPS53-211ENST00000571805 E2F6O75461 281 aa22.16■■□□□ 1.14
VPS53-211ENST00000571805 URODP06132 367 aa22.16■■□□□ 1.14
VPS53-211ENST00000571805 C1SP09871 688 aa22.16■■□□□ 1.14
VPS53-211ENST00000571805 HIST1H2AGP0C0S8 130 aaPredicted RBP22.16■■□□□ 1.14
VPS53-211ENST00000571805 AMD1P17707 334 aa22.16■■□□□ 1.14
VPS53-211ENST00000571805 HIST1H2ADP20671 130 aa22.16■■□□□ 1.14
VPS53-211ENST00000571805 HNRNPFP52597 415 aaKnown RBP22.16■■□□□ 1.14
VPS53-211ENST00000571805 Q6ZNX1 250 aa22.16■■□□□ 1.14
VPS53-211ENST00000571805 ARL10Q8N8L6 244 aa22.16■■□□□ 1.14
VPS53-211ENST00000571805 SLAIN1Q8ND83 568 aa22.16■■□□□ 1.14
VPS53-211ENST00000571805 NRBF2Q96F24 287 aa22.16■■□□□ 1.14
VPS53-211ENST00000571805 HIST1H2AHQ96KK5 128 aa22.16■■□□□ 1.14
VPS53-211ENST00000571805 HIST1H2AJQ99878 128 aa22.16■■□□□ 1.14
VPS53-211ENST00000571805 P2RY13Q9BPV8 354 aa22.16■■□□□ 1.14
VPS53-211ENST00000571805 H2AFJQ9BTM1 129 aa22.16■■□□□ 1.14
VPS53-211ENST00000571805 GPN2Q9H9Y4 310 aaPredicted RBP22.16■■□□□ 1.14
VPS53-211ENST00000571805 U3KQV3 271 aa22.16■■□□□ 1.14
VPS53-211ENST00000571805 SERTM1A2A2V5 107 aa22.15■■□□□ 1.14
VPS53-211ENST00000571805 GFYI3L273 518 aa22.15■■□□□ 1.14
VPS53-211ENST00000571805 LRATO95237 230 aa22.15■■□□□ 1.14
VPS53-211ENST00000571805 C1QCP02747 245 aa22.15■■□□□ 1.14
VPS53-211ENST00000571805 MPC1LP0DKB6 136 aa22.15■■□□□ 1.14
VPS53-211ENST00000571805 MAP4P27816 1152 aaKnown RBP22.15■■□□□ 1.14
VPS53-211ENST00000571805 MAPK1P28482 360 aa22.15■■□□□ 1.14
VPS53-211ENST00000571805 PLA2G16P53816 162 aa22.15■■□□□ 1.14
VPS53-211ENST00000571805 PIGFQ07326 219 aa22.15■■□□□ 1.14
VPS53-211ENST00000571805 DPY19L1Q2PZI1 675 aa22.15■■□□□ 1.14
VPS53-211ENST00000571805 ZC3H12BQ5HYM0 836 aaKnown RBP22.15■■□□□ 1.14
VPS53-211ENST00000571805 DOK6Q6PKX4 331 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms