RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 SCN4AP35499 1836 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 ZNF236Q9UL36 1845 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 TEX13CA0A0J9YWL9 993 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 C2CD4BA6NLJ0 364 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 LGALS8O00214 317 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 FPGTO14772 594 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 RASAL1O95294 804 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 APOC3P02656 99 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 RRASP10301 218 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 NR2C1P13056 603 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 PRKAR2AP13861 404 aaKnown RBP10.59□□□□□ -0.71
CLK3-226ENST00000569406 GSTM5P46439 218 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 SLC3A1Q07837 685 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 CBLBQ13191 982 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 SEMA3BQ13214 749 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 ETFDHQ16134 617 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 SPOUT1Q5T280 376 aaKnown RBP10.59□□□□□ -0.71
CLK3-226ENST00000569406 ALKAL1Q6UXT8 129 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 SPPL2CQ8IUH8 684 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 GPALPP1Q8IXQ4 340 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 CMTR2Q8IYT2 770 aaKnown RBP10.59□□□□□ -0.71
CLK3-226ENST00000569406 C8orf59Q8N0T1 100 aaPredicted RBP10.59□□□□□ -0.71
CLK3-226ENST00000569406 CLEC4FQ8N1N0 589 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 ZNF781Q8N8C0 355 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 DEPDC1BQ8WUY9 529 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 HDAC10Q969S8 669 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 PDXPQ96GD0 296 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 FRMD6Q96NE9 622 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 C11orf84Q9BUA3 381 aaPredicted RBP10.59□□□□□ -0.71
CLK3-226ENST00000569406 MAGEB5Q9BZ81 275 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 BIN3Q9NQY0 253 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 RNF181Q9P0P0 153 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 EGFL7Q9UHF1 273 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 DHRS12A0PJE2 317 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 EFCAB7A8K855 629 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 KCNU1A8MYU2 1149 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 TEX46H3BTG2 121 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 TERTO14746 1132 aaKnown RBP10.59□□□□□ -0.71
CLK3-226ENST00000569406 TREHO43280 583 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 HTR1AP08908 422 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 ZP3P21754 424 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 ATP5C1P36542 298 aaKnown RBP10.59□□□□□ -0.71
CLK3-226ENST00000569406 EML3Q32P44 896 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 N4BP2L1Q5TBK1 243 aaPredicted RBP10.59□□□□□ -0.71
CLK3-226ENST00000569406 OR6B2Q6IFH4 312 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 KLHL17Q6TDP4 642 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 FAM35AQ86V20 835 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 C2CD4CQ8TF44 421 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 SLC22A17Q8WUG5 538 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 CENPNQ96H22 339 aaPredicted RBP10.59□□□□□ -0.71
CLK3-226ENST00000569406 KCNA7Q96RP8 456 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 CLEC4MQ9H2X3 399 aaPredicted RBP10.59□□□□□ -0.71
CLK3-226ENST00000569406 SPON1Q9HCB6 807 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 PNPLA8Q9NP80 782 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 LTB4R2Q9NPC1 389 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 TRHDEQ9UKU6 1024 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 TRPM7Q96QT4 1865 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 PNMA8CA0A1B0GUJ8 204 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 TCRBV3S1A0A5B6 114 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 FZD6O60353 706 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 TRUB2O95900 331 aaKnown RBP10.59□□□□□ -0.71
CLK3-226ENST00000569406 DHFRP00374 187 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 FGF3P11487 239 aaPredicted RBP10.59□□□□□ -0.71
CLK3-226ENST00000569406 SMPD1P17405 629 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 FOXK2Q01167 660 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 CSTF1Q05048 431 aaKnown RBP10.59□□□□□ -0.71
CLK3-226ENST00000569406 PRPSAP1Q14558 356 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 SSPNQ14714 243 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 SURF1Q15526 300 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 ATP6AP1Q15904 470 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 DGKKQ5KSL6 1271 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 ZNF852Q6ZMS4 543 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 HTR3DQ70Z44 454 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 DPPA2Q7Z7J5 298 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 TCTE3Q8IZS6 198 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 AMER2Q8N7J2 671 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 SMG7Q92540 1137 aaKnown RBP10.59□□□□□ -0.71
CLK3-226ENST00000569406 NR4A3Q92570 626 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 PABPC5Q96DU9 382 aaKnown RBP10.59□□□□□ -0.71
CLK3-226ENST00000569406 GFM1Q96RP9 751 aaKnown RBP10.59□□□□□ -0.71
CLK3-226ENST00000569406 MND1Q9BWT6 205 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 PCDH9Q9HC56 1237 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 PRMT7Q9NVM4 692 aaPredicted RBP10.59□□□□□ -0.71
CLK3-226ENST00000569406 NAALAD2Q9Y3Q0 740 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 PEX16Q9Y5Y5 336 aa10.59□□□□□ -0.71
CLK3-226ENST00000569406 COL4A4P53420 1690 aaPredicted RBP10.58□□□□□ -0.71
CLK3-226ENST00000569406 SCAMP2O15127 329 aaKnown RBP10.58□□□□□ -0.72
CLK3-226ENST00000569406 HPGDSO60760 199 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 GPR32O75388 356 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 EIF3GO75821 320 aaKnown RBP eCLIP10.58□□□□□ -0.72
CLK3-226ENST00000569406 ADH1CP00326 375 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 ACSM4P0C7M7 580 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 CD36P16671 472 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 VAMP1P23763 118 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 CHMP24386 653 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 RPL22P35268 128 aaKnown RBP10.58□□□□□ -0.72
CLK3-226ENST00000569406 RPL6Q02878 288 aaKnown RBP10.58□□□□□ -0.72
CLK3-226ENST00000569406 HSF2Q03933 536 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 EMX1Q04741 257 aaPredicted RBP10.58□□□□□ -0.72
CLK3-226ENST00000569406 C2orf80Q0P641 193 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms