RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 INHBAP08476 426 aa16.69■□□□□ 0.26
CLN3-217ENST00000565354 FAM153BP0C7A2 387 aa16.69■□□□□ 0.26
CLN3-217ENST00000565354 TNFRSF8P28908 595 aa16.69■□□□□ 0.26
CLN3-217ENST00000565354 ARL4DP49703 201 aa16.69■□□□□ 0.26
CLN3-217ENST00000565354 RAB28P51157 221 aa16.69■□□□□ 0.26
CLN3-217ENST00000565354 TAS2R39P59534 338 aa16.69■□□□□ 0.26
CLN3-217ENST00000565354 C16orf72Q14CZ0 275 aa16.69■□□□□ 0.26
CLN3-217ENST00000565354 FAM153CQ494X1 144 aa16.69■□□□□ 0.26
CLN3-217ENST00000565354 UBE2R2Q712K3 238 aaPredicted RBP16.69■□□□□ 0.26
CLN3-217ENST00000565354 TAOK1Q7L7X3 1001 aa16.69■□□□□ 0.26
CLN3-217ENST00000565354 NKAPQ8N5F7 415 aaKnown RBP16.69■□□□□ 0.26
CLN3-217ENST00000565354 AGBL5Q8NDL9 886 aa16.69■□□□□ 0.26
CLN3-217ENST00000565354 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.69■□□□□ 0.265e-8■■■■■ 65.3
CLN3-217ENST00000565354 CD180Q99467 661 aa16.69■□□□□ 0.26
CLN3-217ENST00000565354 SLC25A18Q9H1K4 315 aa16.69■□□□□ 0.26
CLN3-217ENST00000565354 ANKZF1Q9H8Y5 726 aa16.69■□□□□ 0.26
CLN3-217ENST00000565354 GEMIN8Q9NWZ8 242 aaKnown RBP16.69■□□□□ 0.26
CLN3-217ENST00000565354 OR6C2Q9NZP2 312 aa16.69■□□□□ 0.26
CLN3-217ENST00000565354 USP9XQ93008 2570 aaPredicted RBP16.69■□□□□ 0.26
CLN3-217ENST00000565354 ISM1B1AKI9 464 aa16.68■□□□□ 0.26
CLN3-217ENST00000565354 POC1B-GALNT4F8VUJ3 575 aa16.68■□□□□ 0.26
CLN3-217ENST00000565354 BTN3A3O00478 584 aa16.68■□□□□ 0.26
CLN3-217ENST00000565354 PRAMEF10O60809 474 aa16.68■□□□□ 0.26
CLN3-217ENST00000565354 PSIP1O75475 530 aaKnown RBP16.68■□□□□ 0.26
CLN3-217ENST00000565354 FAM155BO75949 473 aa16.68■□□□□ 0.26
CLN3-217ENST00000565354 C1QAP02745 245 aa16.68■□□□□ 0.26
CLN3-217ENST00000565354 C8GP07360 202 aa16.68■□□□□ 0.26
CLN3-217ENST00000565354 STMN1P16949 149 aa16.68■□□□□ 0.26
CLN3-217ENST00000565354 ITIH1P19827 911 aa16.68■□□□□ 0.26
CLN3-217ENST00000565354 CYP2A7P20853 494 aa16.68■□□□□ 0.26
CLN3-217ENST00000565354 CDH3P22223 829 aa16.68■□□□□ 0.26
CLN3-217ENST00000565354 PKLRP30613 574 aa16.68■□□□□ 0.26
CLN3-217ENST00000565354 SEPHS1P49903 392 aa16.68■□□□□ 0.26
CLN3-217ENST00000565354 PPP1CAP62136 330 aa16.68■□□□□ 0.26
CLN3-217ENST00000565354 TIAL1Q01085 375 aaKnown RBP eCLIP16.68■□□□□ 0.26
CLN3-217ENST00000565354 UBAP2LQ14157 1087 aaKnown RBP16.68■□□□□ 0.26
CLN3-217ENST00000565354 RAPH1Q70E73 1250 aa16.68■□□□□ 0.26
CLN3-217ENST00000565354 FAM129CQ86XR2 697 aa16.68■□□□□ 0.26
CLN3-217ENST00000565354 SPNS2Q8IVW8 549 aa16.68■□□□□ 0.26
CLN3-217ENST00000565354 IL17FQ96PD4 163 aa16.68■□□□□ 0.26
CLN3-217ENST00000565354 GPR22Q99680 433 aa16.68■□□□□ 0.26
CLN3-217ENST00000565354 CAB39LQ9H9S4 337 aa16.68■□□□□ 0.26
CLN3-217ENST00000565354 GPAMQ9HCL2 828 aa16.68■□□□□ 0.26
CLN3-217ENST00000565354 ACTR10Q9NZ32 417 aa16.68■□□□□ 0.26
CLN3-217ENST00000565354 SPATA7Q9P0W8 599 aa16.68■□□□□ 0.26
CLN3-217ENST00000565354 PDP2Q9P2J9 529 aa16.68■□□□□ 0.26
CLN3-217ENST00000565354 SPTBN1Q01082 2364 aaKnown RBP16.68■□□□□ 0.26
CLN3-217ENST00000565354 UTP20O75691 2785 aaKnown RBP16.67■□□□□ 0.26
CLN3-217ENST00000565354 SDK2Q58EX2 2172 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 EXOC1LA0A1B0GW35 172 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 TLCD2A6NGC4 264 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 ZNF839A8K0R7 811 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 EFCAB7A8K855 629 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 ARHGEF33A8MVX0 844 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 RASGRF2O14827 1237 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 TOX3O15405 576 aaPredicted RBP16.67■□□□□ 0.26
CLN3-217ENST00000565354 MAP3K7O43318 606 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 CHRM5P08912 532 aaPredicted RBP16.67■□□□□ 0.26
CLN3-217ENST00000565354 WT1P19544 449 aaPredicted RBP16.67■□□□□ 0.26
CLN3-217ENST00000565354 MSH2P43246 934 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 PGGT1BP53609 377 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 MAPK10P53779 464 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 CYP4F2P78329 520 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 ZNF460Q14592 562 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 UBAP2Q5T6F2 1119 aaKnown RBP16.67■□□□□ 0.26
CLN3-217ENST00000565354 CYHR1Q6ZMK1 362 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 PRSS42Q7Z5A4 293 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 TAX1BP1Q86VP1 789 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 ZFAND4Q86XD8 727 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 DTX1Q86Y01 620 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 ADGRF3Q8IZF5 1079 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 C2orf73Q8N5S3 287 aaPredicted RBP16.67■□□□□ 0.26
CLN3-217ENST00000565354 OR9A1PQ8NGU1 263 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 MCOLN3Q8TDD5 553 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 UBLCP1Q8WVY7 318 aaPredicted RBP16.67■□□□□ 0.26
CLN3-217ENST00000565354 NRTNQ99748 197 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 MAP3K3Q99759 626 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 TRIM54Q9BYV2 358 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 POPDC3Q9HBV1 291 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 PCDHB11Q9Y5F2 797 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 MYO9AB2RTY4 2548 aa16.67■□□□□ 0.26
CLN3-217ENST00000565354 RIPK2O43353 540 aa16.66■□□□□ 0.26
CLN3-217ENST00000565354 KIF1CO43896 1103 aaKnown RBP16.66■□□□□ 0.26
CLN3-217ENST00000565354 ABHD2P08910 425 aa16.66■□□□□ 0.26
CLN3-217ENST00000565354 HIST1H2AGP0C0S8 130 aaPredicted RBP16.66■□□□□ 0.26
CLN3-217ENST00000565354 ANKRD34CP0C6C1 535 aa16.66■□□□□ 0.26
CLN3-217ENST00000565354 MYBL2P10244 700 aa16.66■□□□□ 0.26
CLN3-217ENST00000565354 GP1BBP13224 206 aa16.66■□□□□ 0.26
CLN3-217ENST00000565354 ZNF37AP17032 561 aaPredicted RBP16.66■□□□□ 0.26
CLN3-217ENST00000565354 HIST1H2ADP20671 130 aa16.66■□□□□ 0.26
CLN3-217ENST00000565354 KPNA2P52292 529 aaKnown RBP16.66■□□□□ 0.26
CLN3-217ENST00000565354 RAB10P61026 200 aa16.66■□□□□ 0.26
CLN3-217ENST00000565354 SP140Q13342 867 aa16.66■□□□□ 0.26
CLN3-217ENST00000565354 TSTA3Q13630 321 aaPredicted RBP16.66■□□□□ 0.26
CLN3-217ENST00000565354 CCSMST1Q4G0I0 132 aa16.66■□□□□ 0.26
CLN3-217ENST00000565354 ANKS6Q68DC2 871 aa16.66■□□□□ 0.26
CLN3-217ENST00000565354 ARHGAP22Q7Z5H3 698 aa16.66■□□□□ 0.26
CLN3-217ENST00000565354 OR2L8Q8NGY9 312 aa16.66■□□□□ 0.26
CLN3-217ENST00000565354 ASB11Q8WXH4 323 aa16.66■□□□□ 0.26
CLN3-217ENST00000565354 SLC22A18Q96BI1 424 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms