RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 KIAA1614Q5VZ46 1190 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 DUPD1Q68J44 220 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 CDHR3Q6ZTQ4 885 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 TRIM73Q86UV7 250 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 PALM2Q8IXS6 379 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 ZBED8Q8IZ13 594 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 LMNTD1Q8N9Z9 388 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 FLVCR1-AS1Q8TAF5 88 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 CD200R1Q8TD46 325 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 ASB11Q8WXH4 323 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 SEC14L1Q92503 715 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 ZUFSPQ96AP4 578 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 CLIP3Q96DZ5 547 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 IL17FQ96PD4 163 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 ARHGAP9Q9BRR9 750 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 SLC12A9Q9BXP2 914 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 PHACTR1Q9C0D0 580 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 KLHL25Q9H0H3 589 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 TSR3Q9UJK0 312 aaKnown RBP12.91□□□□□ -0.34
CLK3-213ENST00000563842 CROTQ9UKG9 612 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 PLCL2Q9UPR0 1127 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 RUVBL2Q9Y230 463 aaKnown RBP12.91□□□□□ -0.34
CLK3-213ENST00000563842 MED16Q9Y2X0 877 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 COL6A6A6NMZ7 2263 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 FER1L5A0AVI2 2057 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 ARHGEF33A8MVX0 844 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 MYO1CO00159 1063 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 TP73O15350 636 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 RECKO95980 971 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 TCN2P20062 427 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 RPS15P62841 145 aaKnown RBP12.9□□□□□ -0.34
CLK3-213ENST00000563842 DNASE1L3Q13609 305 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 CUL1Q13616 776 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 SOWAHCQ53LP3 525 aaPredicted RBP12.9□□□□□ -0.34
CLK3-213ENST00000563842 FAM45BPQ6NSW5 357 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 C8orf74Q6P047 294 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 TLDC1Q6P9B6 456 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 TAX1BP1Q86VP1 789 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 SLC26A11Q86WA9 606 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 CPNE9Q8IYJ1 553 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 MYO1HQ8N1T3 1032 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 C2orf73Q8N5S3 287 aaPredicted RBP12.9□□□□□ -0.34
CLK3-213ENST00000563842 MNS1Q8NEH6 495 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 OR1L3Q8NH93 324 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 GIMAP7Q8NHV1 300 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 FAM45AQ8TCE6 357 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 DENND1AQ8TEH3 1009 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 SMPDL3AQ92484 453 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 STARD8Q92502 1023 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 SLC39A7Q92504 469 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 ZNF592Q92610 1267 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 TTC9Q92623 222 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 CDKL2Q92772 493 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 NDNQ99608 321 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 SLC30A3Q99726 388 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 DPH2Q9BQC3 489 aaPredicted RBP12.9□□□□□ -0.34
CLK3-213ENST00000563842 GPR87Q9BY21 358 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 ACTR5Q9H9F9 607 aaPredicted RBP12.9□□□□□ -0.34
CLK3-213ENST00000563842 UTP6Q9NYH9 597 aaKnown RBP12.9□□□□□ -0.34
CLK3-213ENST00000563842 CIDEBQ9UHD4 219 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 PCDHGA6Q9Y5G7 932 aa12.9□□□□□ -0.34
CLK3-213ENST00000563842 PABPN1LA6NDY0 278 aaKnown RBP12.89□□□□□ -0.35
CLK3-213ENST00000563842 GFYI3L273 518 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 MEN1O00255 615 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 PRICKLE3O43900 615 aaPredicted RBP12.89□□□□□ -0.35
CLK3-213ENST00000563842 KATNA1O75449 491 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 OR2B3O76000 313 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 CCNDBP1O95273 360 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 C8GP07360 202 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 F7P08709 466 aaPredicted RBP12.89□□□□□ -0.35
CLK3-213ENST00000563842 GSTA2P09210 222 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 ERGP11308 486 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 SFTPCP11686 197 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 WT1P19544 449 aaPredicted RBP12.89□□□□□ -0.35
CLK3-213ENST00000563842 MAGP20916 626 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 AGXTP21549 392 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 MCM3P25205 808 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 GABRB3P28472 473 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 CMPK1P30085 196 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 PNLIPRP1P54315 467 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 PLTPP55058 493 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 MRPS25P82663 173 aaKnown RBP12.89□□□□□ -0.35
CLK3-213ENST00000563842 PDAP1Q13442 181 aaKnown RBP12.89□□□□□ -0.35
CLK3-213ENST00000563842 ZIC1Q15915 447 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 CCSMST1Q4G0I0 132 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 TRMT10BQ6PF06 316 aaKnown RBP12.89□□□□□ -0.35
CLK3-213ENST00000563842 FIGLAQ6QHK4 219 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 CYHR1Q6ZMK1 362 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 UBE2R2Q712K3 238 aaPredicted RBP12.89□□□□□ -0.35
CLK3-213ENST00000563842 DSELQ8IZU8 1212 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 DNAJC22Q8N4W6 341 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 GPATCH11Q8N954 259 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 MCOLN3Q8TDD5 553 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 MR1Q95460 341 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 C17orf62Q9BQA9 187 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 WDR83Q9BRX9 315 aaKnown RBP12.89□□□□□ -0.35
CLK3-213ENST00000563842 PLAC1Q9HBJ0 212 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 FAM60AQ9NP50 221 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 SAYSD1Q9NPB0 183 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 IRAK4Q9NWZ3 460 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms