RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 TPSB2P20231 275 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 CHRM3P20309 590 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 GNLYP22749 145 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 RPS3P23396 243 aaKnown RBP eCLIP9.81□□□□□ -0.843e-8■■□□□ 13.6
LDLR-214ENST00000560628 PSMB5P28074 263 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 UQCRFS1P47985 274 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 CD97P48960 835 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 VSX2P58304 361 aaPredicted RBP9.81□□□□□ -0.84
LDLR-214ENST00000560628 YBX1P67809 324 aaKnown RBP9.81□□□□□ -0.84
LDLR-214ENST00000560628 CCZ1BP86790 482 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 CCZ1P86791 482 aaPredicted RBP9.81□□□□□ -0.84
LDLR-214ENST00000560628 CDK16Q00536 496 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 FASTKQ14296 549 aaKnown RBP9.81□□□□□ -0.84
LDLR-214ENST00000560628 TPSAB1Q15661 275 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 PRR30Q53SZ7 412 aaPredicted RBP9.81□□□□□ -0.84
LDLR-214ENST00000560628 ACSBG2Q5FVE4 666 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 ZC3H12BQ5HYM0 836 aaKnown RBP9.81□□□□□ -0.84
LDLR-214ENST00000560628 ANKRD22Q5VYY1 191 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 JMJD6Q6NYC1 403 aaPredicted RBP9.81□□□□□ -0.84
LDLR-214ENST00000560628 MRPL14Q6P1L8 145 aaKnown RBP9.81□□□□□ -0.84
LDLR-214ENST00000560628 TTC27Q6P3X3 843 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 CASC4Q6P4E1 433 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 PPP1R32Q7Z5V6 425 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 CAND1Q86VP6 1230 aaKnown RBP9.81□□□□□ -0.84
LDLR-214ENST00000560628 METTL27Q8N6F8 245 aaPredicted RBP9.81□□□□□ -0.84
LDLR-214ENST00000560628 RBMXL3Q8N7X1 1067 aaKnown RBP9.81□□□□□ -0.84
LDLR-214ENST00000560628 OR2Y1Q8NGV0 311 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 DENND1AQ8TEH3 1009 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 LPGAT1Q92604 370 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 MAGOHBQ96A72 148 aaKnown RBP9.81□□□□□ -0.84
LDLR-214ENST00000560628 PTERQ96BW5 349 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 FER1L6-AS2Q96M78 137 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 FOPNLQ96NB1 174 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 MRM3Q9HC36 420 aaKnown RBP9.81□□□□□ -0.84
LDLR-214ENST00000560628 INTS7Q9NVH2 962 aaKnown RBP9.81□□□□□ -0.84
LDLR-214ENST00000560628 P4HTMQ9NXG6 502 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 STOX2Q9P2F5 926 aaPredicted RBP9.81□□□□□ -0.84
LDLR-214ENST00000560628 MAP10Q9P2G4 905 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 VPS4AQ9UN37 437 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 PCSK5Q92824 1860 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 CCDC88CQ9P219 2028 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 LOC105369274A0A096LPK9 316 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 LOC102723532A0A0G2JNH3 316 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 A0A0J9YVX5 310 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 GOLGA8MH3BSY2 632 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 NRP2O60462 931 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 DPM1O60762 260 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 CTSVO60911 334 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 CD63P08962 238 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 ITGAXP20702 1163 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 OR1D4P47884 311 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 ARSFP54793 590 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 SARNPP82979 210 aaKnown RBP9.8□□□□□ -0.84
LDLR-214ENST00000560628 TSTA3Q13630 321 aaPredicted RBP9.8□□□□□ -0.84
LDLR-214ENST00000560628 KCNJ11Q14654 390 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 INPP5JQ15735 1006 aaPredicted RBP9.8□□□□□ -0.84
LDLR-214ENST00000560628 PLEKHN1Q494U1 663 aaPredicted RBP9.8□□□□□ -0.84
LDLR-214ENST00000560628 DCAF10Q5QP82 559 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 WASHC2DQ5SRD0 308 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 NEPROQ6NW34 567 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 SHISA6Q6ZSJ9 500 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 CENPUQ71F23 418 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 OVCH1Q7RTY7 1134 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 OR4N4Q8N0Y3 316 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 RAB42Q8N4Z0 105 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 FAM26EQ8N5C1 309 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 DTWD1Q8N5C7 304 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 CLEC1AQ8NC01 280 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 DLG3Q92796 817 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 ZUFSPQ96AP4 578 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 IP6K3Q96PC2 410 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 TCF12Q99081 682 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 SMAD5Q99717 465 aaKnown RBP9.8□□□□□ -0.84
LDLR-214ENST00000560628 SELENOSQ9BQE4 189 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 ACAT2Q9BWD1 397 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 RAB11FIP5Q9BXF6 653 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 SLAMF7Q9NQ25 335 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 CUTCQ9NTM9 273 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 MAP4K5Q9Y4K4 846 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 PCDHGB7Q9Y5F8 929 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 MAU2Q9Y6X3 613 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 SNRNP200O75643 2136 aaKnown RBP9.8□□□□□ -0.84
LDLR-214ENST00000560628 DOPEY2Q9Y3R5 2298 aa9.8□□□□□ -0.84
LDLR-214ENST00000560628 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.79□□□□□ -0.84
LDLR-214ENST00000560628 A0A1B0GX78 115 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 A0A1W2PPV9 198 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 CTAGE9A4FU28 777 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 CLEC18AA5D8T8 446 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 SDR42E2A6NKP2 422 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 TARM1B6A8C7 271 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 H3BMM5 538 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 DSCR3O14972 297 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 PFDN6O15212 129 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 ALOX12BO75342 701 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 SORBS2O94875 1100 aaKnown RBP9.79□□□□□ -0.84
LDLR-214ENST00000560628 MED26O95402 600 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 MATN4O95460 622 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 ESR1P03372 595 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 EIF2S1P05198 315 aaKnown RBP9.79□□□□□ -0.84
LDLR-214ENST00000560628 PIM1P11309 404 aaPredicted RBP9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms