RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 LIX1Q8N485 282 aa13.5□□□□□ -0.25
SHMT2-226ENST00000556825 FAM181AQ8N9Y4 354 aa13.5□□□□□ -0.25
SHMT2-226ENST00000556825 IL17RCQ8NAC3 791 aa13.5□□□□□ -0.25
SHMT2-226ENST00000556825 OR8D4Q8NGM9 314 aa13.5□□□□□ -0.25
SHMT2-226ENST00000556825 TMEM174Q8WUU8 243 aa13.5□□□□□ -0.25
SHMT2-226ENST00000556825 IPCEF1Q8WWN9 437 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-226ENST00000556825 RBM18Q96H35 190 aaKnown RBP13.5□□□□□ -0.25
SHMT2-226ENST00000556825 ZC3HAV1LQ96H79 300 aaKnown RBP13.5□□□□□ -0.25
SHMT2-226ENST00000556825 PPP1R16BQ96T49 567 aa13.5□□□□□ -0.25
SHMT2-226ENST00000556825 SPON1Q9HCB6 807 aa13.5□□□□□ -0.25
SHMT2-226ENST00000556825 TMEM8AQ9HCN3 771 aa13.5□□□□□ -0.25
SHMT2-226ENST00000556825 ZFP64Q9NPA5 681 aa13.5□□□□□ -0.25
SHMT2-226ENST00000556825 MIOXQ9UGB7 285 aa13.5□□□□□ -0.25
SHMT2-226ENST00000556825 HES2Q9Y543 173 aa13.5□□□□□ -0.25
SHMT2-226ENST00000556825 SLC35F4A4IF30 521 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 PLA2G10O15496 165 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 HPGDSO60760 199 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 TULP3O75386 442 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 POP7O75817 140 aaKnown RBP13.49□□□□□ -0.25
SHMT2-226ENST00000556825 KLRK1P26718 216 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 RIDAP52758 137 aaKnown RBP13.49□□□□□ -0.25
SHMT2-226ENST00000556825 BCAT1P54687 386 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 OGDHQ02218 1023 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 FOXM1Q08050 763 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 RAPSNQ13702 412 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 NOL9Q5SY16 702 aaKnown RBP13.49□□□□□ -0.25
SHMT2-226ENST00000556825 SLC25A25Q6KCM7 469 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 RAB11FIP2Q7L804 512 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 PROSER1Q86XN7 944 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 FUNDC1Q8IVP5 155 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 OR9I1Q8NGQ6 314 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 FAM84AQ96KN4 292 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 ART5Q96L15 291 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 NSMCE2Q96MF7 247 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 DPH7Q9BTV6 452 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 ACE2Q9BYF1 805 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-226ENST00000556825 CEP41Q9BYV8 373 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 SDCBP2Q9H190 292 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 RBBP6Q7Z6E9 1792 aaKnown RBP13.49□□□□□ -0.25
SHMT2-226ENST00000556825 FAM74A7A6NL05 159 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 FXYD1O00168 92 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 CBX4O00257 560 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 VPS26AO75436 327 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 S100A8P05109 93 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 FBP1P09467 338 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 VAMP1P23763 118 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 GPX4P36969 197 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-226ENST00000556825 PGDP52209 483 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 HSF2Q03933 536 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 CAPRIN1Q14444 709 aaKnown RBP13.49□□□□□ -0.25
SHMT2-226ENST00000556825 EMC2Q15006 297 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 HSDL1Q3SXM5 330 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 FAM74A3Q4VXF1 159 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 PRSS36Q5K4E3 855 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 KIAA1614Q5VZ46 1190 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 LAIR1Q6GTX8 287 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 SLFN12LQ6IEE8 588 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 PDE12Q6L8Q7 609 aaKnown RBP13.49□□□□□ -0.25
SHMT2-226ENST00000556825 C1orf186Q6ZWK4 172 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 SVOPLQ8N434 492 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 NIPA2Q8N8Q9 360 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 DUSP18Q8NEJ0 188 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 GPR151Q8TDV0 419 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 ASZ1Q8WWH4 475 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 FAM84BQ96KN1 310 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-226ENST00000556825 WDFY2Q96P53 400 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 SIGLEC11Q96RL6 698 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 RTP3Q9BQQ7 232 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 TRIM8Q9BZR9 551 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 BTBD1Q9H0C5 482 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 ZDHHC4Q9NPG8 344 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 EQTNQ9NQ60 294 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 V9GYQ6 96 aa13.49□□□□□ -0.25
SHMT2-226ENST00000556825 A0A096LPK6 155 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 ZNF729A6NN14 1252 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-226ENST00000556825 TERTO14746 1132 aaKnown RBP13.48□□□□□ -0.25
SHMT2-226ENST00000556825 OGTO15294 1046 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 FAM20BO75063 409 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 SLC43A1O75387 559 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 CFDP00746 253 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-226ENST00000556825 CD63P08962 238 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 CSF3P09919 207 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 RAP2AP10114 183 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 ARSBP15848 533 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 OGNP20774 298 aaKnown RBP13.48□□□□□ -0.25
SHMT2-226ENST00000556825 ATP5F1P24539 256 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-226ENST00000556825 CLCN7P51798 805 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 IRF9Q00978 393 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 PUM1Q14671 1186 aaKnown RBP eCLIP13.48□□□□□ -0.25
SHMT2-226ENST00000556825 NOMO1Q15155 1222 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 FSCN1Q16658 493 aaKnown RBP13.48□□□□□ -0.25
SHMT2-226ENST00000556825 TIGD6Q17RP2 521 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 ZNF528Q3MIS6 628 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 RGS7BPQ6MZT1 257 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-226ENST00000556825 USP17L2Q6R6M4 530 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 SIAH1Q8IUQ4 282 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 ABRAQ8N0Z2 381 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 LNX2Q8N448 690 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 CERS5Q8N5B7 392 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 FBXO30Q8TB52 745 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms