RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 CSH2P0DML3 217 aa3.22□□□□□ -1.89
SCFD1-216ENST00000555550 DARSP14868 501 aaKnown RBP3.22□□□□□ -1.89
SCFD1-216ENST00000555550 SHC1P29353 583 aa3.22□□□□□ -1.89
SCFD1-216ENST00000555550 CCR10P46092 362 aa3.22□□□□□ -1.89
SCFD1-216ENST00000555550 LEPRP48357 1165 aaKnown RBP3.22□□□□□ -1.89
SCFD1-216ENST00000555550 RXRGP48443 463 aa3.22□□□□□ -1.89
SCFD1-216ENST00000555550 CLNS1AP54105 237 aaKnown RBP3.22□□□□□ -1.89
SCFD1-216ENST00000555550 CDH13P55290 713 aa3.22□□□□□ -1.89
SCFD1-216ENST00000555550 ZNF415Q09FC8 603 aa3.22□□□□□ -1.89
SCFD1-216ENST00000555550 HERC3Q15034 1050 aa3.22□□□□□ -1.89
SCFD1-216ENST00000555550 NTRK2Q16620 822 aa3.22□□□□□ -1.89
SCFD1-216ENST00000555550 XKR3Q5GH77 459 aa3.22□□□□□ -1.89
SCFD1-216ENST00000555550 LYSMD4Q5XG99 296 aa3.22□□□□□ -1.89
SCFD1-216ENST00000555550 C11orf63Q6NUN7 778 aa3.22□□□□□ -1.89
SCFD1-216ENST00000555550 BTN2A1Q7KYR7 527 aa3.22□□□□□ -1.89
SCFD1-216ENST00000555550 ARHGAP22Q7Z5H3 698 aa3.22□□□□□ -1.89
SCFD1-216ENST00000555550 ADIPOR2Q86V24 386 aa3.22□□□□□ -1.89
SCFD1-216ENST00000555550 SYN2Q92777 582 aaPredicted RBP3.22□□□□□ -1.89
SCFD1-216ENST00000555550 CENPTQ96BT3 561 aa3.22□□□□□ -1.89
SCFD1-216ENST00000555550 DHX58Q96C10 678 aa3.22□□□□□ -1.89
SCFD1-216ENST00000555550 SPDL1Q96EA4 605 aa3.22□□□□□ -1.89
SCFD1-216ENST00000555550 THOC1Q96FV9 657 aaKnown RBP3.22□□□□□ -1.89
SCFD1-216ENST00000555550 ZNF486Q96H40 463 aaPredicted RBP3.22□□□□□ -1.89
SCFD1-216ENST00000555550 GPATCH1Q9BRR8 931 aaKnown RBP3.22□□□□□ -1.89
SCFD1-216ENST00000555550 OR2B2Q9GZK3 357 aa3.22□□□□□ -1.89
SCFD1-216ENST00000555550 WWTR1Q9GZV5 400 aa3.22□□□□□ -1.89
SCFD1-216ENST00000555550 WNT5BQ9H1J7 359 aa3.22□□□□□ -1.89
SCFD1-216ENST00000555550 C19orf25Q9UFG5 118 aaPredicted RBP3.22□□□□□ -1.89
SCFD1-216ENST00000555550 STUB1Q9UNE7 303 aa3.22□□□□□ -1.89
SCFD1-216ENST00000555550 PRRC2AP48634 2157 aaKnown RBP3.22□□□□□ -1.89
SCFD1-216ENST00000555550 PCNX3Q9H6A9 2034 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 LOC102723996A0A087X1L8 192 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 hCG_1807616A0A1W2PRN6 198 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 C2orf81A6NN90 581 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 C15orf61A6NNL5 157 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 GLRA3O75311 464 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 GJB3O75712 270 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 DDHD2O94830 711 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 ALOX12P18054 663 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 PRKACGP22612 351 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 CSTF2P33240 577 aaKnown RBP eCLIP3.21□□□□□ -1.9
SCFD1-216ENST00000555550 HOXD13P35453 343 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 GCNT1Q02742 428 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 EPS8Q12929 822 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 TAF10Q12962 218 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 FASTKD3Q14CZ7 662 aaKnown RBP3.21□□□□□ -1.9
SCFD1-216ENST00000555550 PDLIM3Q53GG5 364 aaPredicted RBP3.21□□□□□ -1.9
SCFD1-216ENST00000555550 SPDYCQ5MJ68 293 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 Q6ZRP5 223 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 G2E3Q7L622 706 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 NUDT13Q86X67 352 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 LMNTD2Q8IXW0 634 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 MAPK15Q8TD08 544 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 SLAMF9Q96A28 289 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 SEPHS2Q99611 448 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 POLR3GLQ9BT43 218 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 EQTNQ9NQ60 294 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 SLC35C2Q9NQQ7 365 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 BLOC1S4Q9NUP1 217 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 FAM120CQ9NX05 1096 aaKnown RBP3.21□□□□□ -1.9
SCFD1-216ENST00000555550 TEX10Q9NXF1 929 aaPredicted RBP3.21□□□□□ -1.9
SCFD1-216ENST00000555550 THEGQ9P2T0 379 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 TBC1D29Q9UFV1 150 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 PADI2Q9Y2J8 665 aa3.21□□□□□ -1.9
SCFD1-216ENST00000555550 PI15O43692 258 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 IDH3BO43837 385 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 SRSF10O75494 262 aaKnown RBP3.2□□□□□ -1.9
SCFD1-216ENST00000555550 CDK2AP2O75956 126 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 SEC24AO95486 1093 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 C22orf31O95567 290 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 SLC2A2P11168 524 aaPredicted RBP3.2□□□□□ -1.9
SCFD1-216ENST00000555550 CYP2A7P20853 494 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 ELAVL2Q12926 359 aaKnown RBP3.2□□□□□ -1.9
SCFD1-216ENST00000555550 HSPB3Q12988 150 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 PCLAFQ15004 111 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 TNIP1Q15025 636 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 SNAPC1Q16533 368 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 SYT14P1Q58G82 188 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 SLC35D3Q5M8T2 416 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 FAM205BPQ63HN1 556 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 TMPRSS11BQ86T26 416 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 LINC00346Q8IVM7 164 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 AMER3Q8N944 861 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 OR2L2Q8NH16 312 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 PTERQ96BW5 349 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 NXNL1Q96CM4 212 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 EVI5LQ96CN4 794 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 SPACA9Q96E40 222 aaPredicted RBP3.2□□□□□ -1.9
SCFD1-216ENST00000555550 ARSGQ96EG1 525 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 RSRC1Q96IZ7 334 aaKnown RBP3.2□□□□□ -1.9
SCFD1-216ENST00000555550 NKX3-1Q99801 234 aaPredicted RBP3.2□□□□□ -1.9
SCFD1-216ENST00000555550 SHARPINQ9H0F6 387 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 Q9N2K0 584 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 MAN2C1Q9NTJ4 1040 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 GIMAP4Q9NUV9 329 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 MRPL15Q9P015 296 aaKnown RBP3.2□□□□□ -1.9
SCFD1-216ENST00000555550 MUTYHQ9UIF7 546 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 KLK13Q9UKR3 277 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 PPIEQ9UNP9 301 aaKnown RBP3.2□□□□□ -1.9
SCFD1-216ENST00000555550 TMEM5Q9Y2B1 443 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms