RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 TNKS2Q9H2K2 1166 aa17.12■□□□□ 0.33
SYNE3-202ENST00000553340 RETREG1Q9H6L5 497 aa17.12■□□□□ 0.33
SYNE3-202ENST00000553340 THG1LQ9NWX6 298 aaKnown RBP17.12■□□□□ 0.33
SYNE3-202ENST00000553340 PNMA8BQ9ULN7 279 aaPredicted RBP17.12■□□□□ 0.33
SYNE3-202ENST00000553340 ATP11BQ9Y2G3 1177 aa17.12■□□□□ 0.33
SYNE3-202ENST00000553340 DNAH12Q6ZR08 3092 aa17.12■□□□□ 0.33
SYNE3-202ENST00000553340 LOC730098B7Z3J9 87 aa17.12■□□□□ 0.33
SYNE3-202ENST00000553340 UPK1BO75841 260 aa17.12■□□□□ 0.33
SYNE3-202ENST00000553340 ZNF7P17097 686 aaPredicted RBP17.12■□□□□ 0.33
SYNE3-202ENST00000553340 ITGB6P18564 788 aa17.12■□□□□ 0.33
SYNE3-202ENST00000553340 FPR1P21462 350 aa17.12■□□□□ 0.33
SYNE3-202ENST00000553340 CLDN8P56748 225 aa17.12■□□□□ 0.33
SYNE3-202ENST00000553340 CYP2U1Q7Z449 544 aa17.12■□□□□ 0.33
SYNE3-202ENST00000553340 ANKRD46Q86W74 232 aa17.12■□□□□ 0.33
SYNE3-202ENST00000553340 HOMEZQ8IX15 550 aa17.12■□□□□ 0.33
SYNE3-202ENST00000553340 ELMOD1Q8N336 334 aa17.12■□□□□ 0.33
SYNE3-202ENST00000553340 USP7Q93009 1102 aa17.12■□□□□ 0.33
SYNE3-202ENST00000553340 INPP5KQ9BT40 448 aa17.12■□□□□ 0.33
SYNE3-202ENST00000553340 ABCB10Q9NRK6 738 aa17.12■□□□□ 0.33
SYNE3-202ENST00000553340 PDP1Q9P0J1 537 aaPredicted RBP17.12■□□□□ 0.33
SYNE3-202ENST00000553340 IL17CQ9P0M4 197 aa17.12■□□□□ 0.33
SYNE3-202ENST00000553340 OR2A25A4D2G3 310 aa17.11■□□□□ 0.33
SYNE3-202ENST00000553340 RPLP2P05387 115 aaKnown RBP17.11■□□□□ 0.33
SYNE3-202ENST00000553340 EPB42P16452 691 aa17.11■□□□□ 0.33
SYNE3-202ENST00000553340 DGKAP23743 735 aa17.11■□□□□ 0.33
SYNE3-202ENST00000553340 GSSP48637 474 aa17.11■□□□□ 0.33
SYNE3-202ENST00000553340 CLK1P49759 484 aaKnown RBP17.11■□□□□ 0.33
SYNE3-202ENST00000553340 RPS24P62847 133 aaKnown RBP17.11■□□□□ 0.33
SYNE3-202ENST00000553340 FPGSQ05932 587 aa17.11■□□□□ 0.33
SYNE3-202ENST00000553340 CTXN3Q4LDR2 81 aa17.11■□□□□ 0.33
SYNE3-202ENST00000553340 KIAA1614Q5VZ46 1190 aa17.11■□□□□ 0.33
SYNE3-202ENST00000553340 DCSTAMPQ9H295 470 aa17.11■□□□□ 0.33
SYNE3-202ENST00000553340 KIF17Q9P2E2 1029 aa17.11■□□□□ 0.33
SYNE3-202ENST00000553340 H3BNC9 293 aa17.11■□□□□ 0.33
SYNE3-202ENST00000553340 RHOCP08134 193 aa17.11■□□□□ 0.33
SYNE3-202ENST00000553340 KRT20P35900 424 aa17.11■□□□□ 0.33
SYNE3-202ENST00000553340 TGFBR2P37173 567 aa17.11■□□□□ 0.33
SYNE3-202ENST00000553340 OR1G1P47890 313 aa17.11■□□□□ 0.33
SYNE3-202ENST00000553340 HNRNPFP52597 415 aaKnown RBP17.11■□□□□ 0.33
SYNE3-202ENST00000553340 TUBA1BP68363 451 aa17.11■□□□□ 0.33
SYNE3-202ENST00000553340 PROX2Q3B8N5 592 aa17.11■□□□□ 0.33
SYNE3-202ENST00000553340 TUBA1AQ71U36 451 aa17.11■□□□□ 0.33
SYNE3-202ENST00000553340 HORMAD1Q86X24 394 aa17.11■□□□□ 0.33
SYNE3-202ENST00000553340 MTFMTQ96DP5 389 aaKnown RBP17.11■□□□□ 0.33
SYNE3-202ENST00000553340 YIPF2Q9BWQ6 316 aa17.11■□□□□ 0.33
SYNE3-202ENST00000553340 GPR63Q9BZJ6 419 aa17.11■□□□□ 0.33
SYNE3-202ENST00000553340 MMP27Q9H306 513 aa17.11■□□□□ 0.33
SYNE3-202ENST00000553340 KRT84Q9NSB2 600 aa17.11■□□□□ 0.33
SYNE3-202ENST00000553340 ERVK-11Q9UQG0 969 aa17.11■□□□□ 0.33
SYNE3-202ENST00000553340 SAGE2PA6NJ88 616 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 PARNO95453 639 aaKnown RBP17.1■□□□□ 0.33
SYNE3-202ENST00000553340 KRT6AP02538 564 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 KRT6BP04259 564 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 LCKP06239 509 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 AKR1A1P14550 325 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 EFNA1P20827 205 aaPredicted RBP17.1■□□□□ 0.33
SYNE3-202ENST00000553340 TGFBR1P36897 503 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 KRT6CP48668 564 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 ARPP19P56211 112 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 TWF1Q12792 350 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 SLC13A2Q13183 592 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 ZNF404Q494X3 552 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 DOK6Q6PKX4 331 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 GLB1LQ6UWU2 654 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 AHSA2Q719I0 299 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 ZNF598Q86UK7 904 aaKnown RBP17.1■□□□□ 0.33
SYNE3-202ENST00000553340 LYSMD2Q8IV50 215 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 KIAA1958Q8N8K9 716 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 ITPAQ9BY32 194 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 AASDHPPTQ9NRN7 309 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 RASSF1Q9NS23 344 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 PRG3Q9Y2Y8 225 aaPredicted RBP17.1■□□□□ 0.33
SYNE3-202ENST00000553340 EVPLLA8MZ36 301 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 CLDN11O75508 207 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 FABP3P05413 133 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 PTPN6P29350 595 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 HOXA9P31269 272 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 CDKN2CP42773 168 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 PPP3CCP48454 512 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 SLC11A2P49281 568 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 TTLL9Q3SXZ7 439 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 ZNF362Q5T0B9 420 aaPredicted RBP17.1■□□□□ 0.33
SYNE3-202ENST00000553340 TUBA3EQ6PEY2 450 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 SERPINA9Q86WD7 417 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 FAM9CQ8IZT9 166 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 ATG16L2Q8NAA4 619 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 SLC38A4Q969I6 547 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 SEPT5Q99719 369 aaPredicted RBP17.1■□□□□ 0.33
SYNE3-202ENST00000553340 SLC29A3Q9BZD2 475 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 DLGAP4Q9Y2H0 992 aa17.1■□□□□ 0.33
SYNE3-202ENST00000553340 ILVBLA1L0T0 632 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 hCG_2039718K7EN88 272 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 RFXANKO14593 260 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 SLC25A14O95258 325 aaPredicted RBP17.09■□□□□ 0.33
SYNE3-202ENST00000553340 PRPS2P11908 318 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 HOXB9P17482 250 aaPredicted RBP17.09■□□□□ 0.33
SYNE3-202ENST00000553340 RPS3P23396 243 aaKnown RBP eCLIP17.09■□□□□ 0.33
SYNE3-202ENST00000553340 ZNF181Q2M3W8 571 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 UBE2UQ5VVX9 321 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 METTL2BQ6P1Q9 378 aaKnown RBP17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms