RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 ITIH1P19827 911 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 SPRP35270 261 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-216ENST00000552909 CASP3P42574 277 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 ARCN1P48444 511 aaKnown RBP7.49□□□□□ -1.21
LIMA1-216ENST00000552909 CRADDP78560 199 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 ADARB1P78563 741 aaKnown RBP7.49□□□□□ -1.21
LIMA1-216ENST00000552909 ARF5P84085 180 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 IRF9Q00978 393 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 RPL6Q02878 288 aaKnown RBP7.49□□□□□ -1.21
LIMA1-216ENST00000552909 VAC14Q08AM6 782 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 SEMA5AQ13591 1074 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 FASTKQ14296 549 aaKnown RBP7.49□□□□□ -1.21
LIMA1-216ENST00000552909 SQLEQ14534 574 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 SMAD1Q15797 465 aaKnown RBP7.49□□□□□ -1.21
LIMA1-216ENST00000552909 DGUOKQ16854 277 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 PAGE2BQ5JRK9 111 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 DDX59Q5T1V6 619 aaKnown RBP eCLIP7.49□□□□□ -1.21
LIMA1-216ENST00000552909 RSBN1Q5VWQ0 802 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-216ENST00000552909 IL31Q6EBC2 164 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 LAIR1Q6GTX8 287 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 FAM45BPQ6NSW5 357 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 LAYNQ6UX15 382 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 ZYG11AQ6WRX3 759 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 HACD2Q6Y1H2 254 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 ARHGAP36Q6ZRI8 547 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 SLC16A12Q6ZSM3 486 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 PID1Q7Z2X4 250 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 CLEC14AQ86T13 490 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 ADCK1Q86TW2 530 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 ASCC1Q8N9N2 400 aaKnown RBP7.49□□□□□ -1.21
LIMA1-216ENST00000552909 DCAF4L2Q8NA75 395 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 KDM1BQ8NB78 822 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 GOLM1Q8NBJ4 401 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 FAM45AQ8TCE6 357 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 HCAR2Q8TDS4 363 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 HTRA1Q92743 480 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 TP53INP1Q96A56 240 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 MOCOSQ96EN8 888 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 TOE1Q96GM8 510 aaKnown RBP7.49□□□□□ -1.21
LIMA1-216ENST00000552909 ATXN7L3BQ96GX2 97 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 RBBP8Q99708 897 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 C2orf49Q9BVC5 232 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-216ENST00000552909 ACE2Q9BYF1 805 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-216ENST00000552909 RSPH9Q9H1X1 276 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-216ENST00000552909 SOX17Q9H6I2 414 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-216ENST00000552909 ATP13A1Q9HD20 1204 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 TMEM74BQ9NUR3 256 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 USP36Q9P275 1121 aaKnown RBP7.49□□□□□ -1.21
LIMA1-216ENST00000552909 NCDNQ9UBB6 729 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 SERGEFQ9UGK8 458 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 BAG5Q9UL15 447 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 RABL2BQ9UNT1 228 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 HS3ST2Q9Y278 367 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 EDDM13A0A1B0GTR0 161 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 SYCE1LA8MT33 242 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 WASH4PA8MWX3 477 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 M0R3G1 203 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 PLK4O00444 970 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 RAMP2O60895 175 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 ZNF217O75362 1048 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 NADKO95544 446 aaPredicted RBP7.48□□□□□ -1.21
LIMA1-216ENST00000552909 SNAP29O95721 258 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 DLGAP3O95886 979 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 ALBP02768 609 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 RETP07949 1114 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 SNRPB2P08579 225 aaKnown RBP7.48□□□□□ -1.21
LIMA1-216ENST00000552909 ERVK-10P10266 1014 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 PRKACBP22694 351 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 HTR1BP28222 390 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 CD40LGP29965 261 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 IFNA8P32881 189 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 ACSL1P33121 698 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 NNMTP40261 264 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 DHPSP49366 369 aaPredicted RBP7.48□□□□□ -1.21
LIMA1-216ENST00000552909 LIMK2P53671 638 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 SESN2P58004 480 aaPredicted RBP7.48□□□□□ -1.21
LIMA1-216ENST00000552909 SELPLGQ14242 412 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 CTF1Q16619 201 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 POM121L1PQ3SYA9 428 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 AGKQ53H12 422 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 RBM48Q5RL73 367 aaKnown RBP7.48□□□□□ -1.21
LIMA1-216ENST00000552909 UBE2UQ5VVX9 321 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 CCDC81Q6ZN84 652 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 SPPL2CQ8IUH8 684 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 SLC41A1Q8IVJ1 513 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 ARHGAP12Q8IWW6 846 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 FAM20CQ8IXL6 584 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 SPARTQ8N0X7 666 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 PELI3Q8N2H9 469 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 OR7A2PQ8NGA2 310 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 OR6Q1Q8NGQ2 317 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 ANGPTL6Q8NI99 470 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 RASSF5Q8WWW0 418 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 HDAC10Q969S8 669 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 CERS2Q96G23 380 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 TSNARE1Q96NA8 513 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 DACH2Q96NX9 599 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 NAT9Q9BTE0 207 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 SLC25A23Q9BV35 468 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 TNKS2Q9H2K2 1166 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms